QoS Routing in General Petersen-Torus Networks: A Case Study. - Renmin Han; Jun Huang (J. Convergence Inf. Technol., 2010)

Iterative Methods in Large Field Electron Microscope Tomography. - Xiaohua Wan; Sebastien Phan; Albert F. Lawrence; Fa Zhang 001; Renmin Han; Zhiyong Liu 002; Mark H. Ellisman (SIAM J. Sci. Comput., 2013)

Fiducial marker detection via deep learning approach for electron tomography. - Yu Hao; Renmin Han; Xiaohua Wan; Fa Zhang 001; Shiwei Sun (BIBM, 2018)

An accurate and rapid continuous wavelet dynamic time warping algorithm for end-to-end mapping in ultra-long nanopore sequencing. - Renmin Han; Yu Li 006; Xin Gao 001; Sheng Wang 001 (Bioinform., 2018)

A fast fiducial marker tracking model for fully automatic alignment in electron tomography. - Renmin Han; Fa Zhang 001; Xin Gao 001 (Bioinform., 2018)

DeepSimulator: a deep simulator for Nanopore sequencing. - Yu Li 006; Renmin Han; Chongwei Bi; Mo Li 005; Sheng Wang 001; Xin Gao 001 (Bioinform., 2018)

DLBI: deep learning guided Bayesian inference for structure reconstruction of super-resolution fluorescence microscopy. - Yu Li 006; Fan Xu; Fa Zhang 001; Pingyong Xu; Mingshu Zhang; Ming Fan 003; Lihua Li 002; Xin Gao 001; Renmin Han (Bioinform., 2018)

A joint method for marker-free alignment of tilt series in electron tomography. - Renmin Han; Zhipeng Bao; Xiangrui Zeng; Tongxin Niu; Fa Zhang 001; Min Xu 009; Xin Gao 001 (Bioinform., 2019)

AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction. - Renmin Han; Xiaohua Wan; Lun Li; Albert F. Lawrence; Peng Yang 010; Yu Li 006; Sheng Wang 001; Fei Sun; Zhiyong Liu 002; Xin Gao 001; Fa Zhang 001 (Bioinform., 2019)

PIXER: an automated particle-selection method based on segmentation using a deep neural network. - Jingrong Zhang; Zihao Wang; Yu Chen; Renmin Han; Zhiyong Liu 002; Fei Sun; Fa Zhang 001 (BMC Bioinform., 2019)

Dilated-DenseNet for Macromolecule Classification in Cryo-electron Tomography. - Shan Gao; Renmin Han; Xiangrui Zeng; Xuefeng Cui; Zhiyong Liu 002; Min Xu 009; Fa Zhang 001 (ISBRA, 2020)

Novel algorithms for efficient subsequence searching and mapping in nanopore raw signals towards targeted sequencing. - Renmin Han; Sheng Wang 001; Xin Gao 001 (Bioinform., 2020)

Compressed sensing improved iterative reconstruction-reprojection algorithm for electron tomography. - Lun Li; Renmin Han; Zhaotian Zhang; Tiande Guo; Zhiyong Liu 002; Fa Zhang 001 (BMC Bioinform., 2020)

A Hybrid Frequency-Spatial Domain Model for Sparse Image Reconstruction in Scanning Transmission Electron Microscopy. - Bintao He; Fa Zhang 001; Huanshui Zhang; Renmin Han (ICCV, 2021)

Self-Supervised Cryo-Electron Tomography Volumetric Image Restoration from Single Noisy Volume with Sparsity Constraint. - Zhidong Yang; Fa Zhang 001; Renmin Han (ICCV, 2021)

TransRef enables accurate transcriptome assembly by redefining accurate neo-splicing graphs. - Ting Yu 010; Renmin Han; Zhaoyuan Fang; Zengchao Mu; Hongyu Zheng; Juntao Liu (Briefings Bioinform., 2021)

Robust and ultrafast fiducial marker correspondence in electron tomography by a two-stage algorithm considering local constraints. - Renmin Han; Guojun Li; Xin Gao 001 (Bioinform., 2021)

A novel constrained reconstruction model towards high-resolution subtomogram averaging. - Renmin Han; Lun Li; Peng Yang 010; Fa Zhang 001; Xin Gao 001 (Bioinform., 2021)

Noise-Transfer2Clean: denoising cryo-EM images based on noise modeling and transfer. - Hongjia Li; Hui Zhang; Xiaohua Wan; Zhidong Yang; Chengmin Li; Jintao Li 001; Renmin Han; Ping Zhu; Fa Zhang 001 (Bioinform., 2022)

Neighborhood-aware Geometric Encoding Network for Point Cloud Registration. - Lifa Zhu; Haining Guan; Changwei Lin; Renmin Han (CoRR, 2022)

Macromolecules Structural Classification With a 3D Dilated Dense Network in Cryo-Electron Tomography. - Shan Gao; Renmin Han; Xiangrui Zeng; Zhiyong Liu 002; Min Xu 009; Fa Zhang 001 (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Correction of image distortion in large-field ssEM stitching by an unsupervised intermediate-space solving network. - Bintao He; Yan Zhang; Fa Zhang 001; Renmin Han (Bioinform., 2022)

SaID: Simulation-Aware Image Denoising Pre-trained Model for Cryo-EM Micrographs. - Zhidong Yang; Hongjia Li; Dawei Zang; Renmin Han; Fa Zhang 001 (ISBRA, 2023)

CryoAlign: feature-based method for global and local 3D alignment of EM density maps. - Bintao He; Fa Zhang 001; Chenjie Feng; Jianyi Yang 002; Xin Gao 001; Renmin Han (CoRR, 2023)

A physics-informed convolutional neural network for the simulation and prediction of two-phase Darcy flows in heterogeneous porous media. - Zhao Zhang 006; Xia Yan; Piyang Liu; Kai Zhang; Renmin Han; Sheng Wang 001 (J. Comput. Phys., 2023)

Serial Section Microscopy Image Inpainting Guided by Axial Optical Flow. - Yiran Cheng; Bintao He; Fa Zhang 001; Renmin Han (ACM Multimedia, 2024)

Few-shot classification of Cryo-ET subvolumes with deep Brownian distance covariance. - Xueshi Yu; Renmin Han; Haitao Jiao; Wenjia Meng (Briefings Bioinform., 2024)

UPicker: a semi-supervised particle picking transformer method for cryo-EM micrographs. - Chi Zhang; Yiran Cheng; Kaiwen Feng; Fa Zhang 001; Renmin Han; Jieqing Feng (Briefings Bioinform., 2024)

GFPack++: Improving 2D Irregular Packing by Learning Gradient Field with Attention. - Tianyang Xue; Lin Lu 001; Yang Liu 014; Mingdong Wu; Hao Dong 003; Yanbin Zhang; Renmin Han; Baoquan Chen (CoRR, 2024)

FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval. - Junhai Qi; Chenjie Feng; Yulin Shi; Jianyi Yang 002; Fa Zhang 001; Guojun Li; Renmin Han (Genom. Proteom. Bioinform., 2024)

Improved Denoising of Cryo-Electron Microscopy Micrographs with Simulation-Aware Pretraining. - Zhidong Yang; Hongjia Li; Dawei Zang; Renmin Han; Fa Zhang 001 (J. Comput. Biol., 2024)

Highly efficient clustering of long-read transcriptomic data with GeLuster. - Junchi Ma; Xiaoyu Zhao; Enfeng Qi; Renmin Han; Ting Yu 010; Guojun Li (Bioinform., 2024)

A Gaussian Filter-Based 3D Registration Method for Series Section Electron Microscopy. - Zhenbang Zhang; Hongjia Li; Zhiqiang Xu; Wenjia Meng; Renmin Han (AAAI, 2025)