Megx.net - database resources for marine ecological genomics. - Thierry Lombardot; Renzo Kottmann; Hauke Pfeffer; Michael Richter; Hanno Teeling; Christian Quast; Frank Oliver Glöckner (Nucleic Acids Res., 2006)

MetaLook: a 3D visualisation software for marine ecological genomics. - Thierry Lombardot; Renzo Kottmann; Gregory Giuliani; Andrea de Bono; Nans Addor; Frank Oliver Glöckner (BMC Bioinform., 2007)

MetaMine - A tool to detect and analyse gene patterns in their environmental context. - Uta Bohnebeck; Thierry Lombardot; Renzo Kottmann; Frank Oliver Glöckner (BMC Bioinform., 2008)

JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes. - Michael Richter; Thierry Lombardot; Ivaylo Kostadinov; Renzo Kottmann; Melissa Beth Duhaime; Jörg Peplies; Frank Oliver Glöckner (BMC Bioinform., 2008)

Applying graph theoretic approaches to microbial metagenomes: ecological perspectives on function. - Wolfgang Hankeln; Pier Luigi Buttigieg; Ivaylo Kostadinov; Renzo Kottmann; Pelin Yilmaz; Melissa Beth Duhaime; Frank Oliver Glöckner (BCB, 2010)

MetaBar - a tool for consistent contextual data acquisition and standards compliant submission. - Wolfgang Hankeln; Pier Luigi Buttigieg; Dennis Fink; Renzo Kottmann; Pelin Yilmaz; Frank Oliver Glöckner (BMC Bioinform., 2010)

Megx.net: integrated database resource for marine ecological genomics. - Renzo Kottmann; Ivaylo Kostadinov; Melissa Beth Duhaime; Pier Luigi Buttigieg; Pelin Yilmaz; Wolfgang Hankeln; Jost Waldmann; Frank Oliver Glöckner (Nucleic Acids Res., 2010)

Poseidon: An information retrieval and extraction system for metagenomic marine science. - Marcin Radom; Agnieszka Rybarczyk; Renzo Kottmann; Piotr Formanowicz; Marta Szachniuk; Frank Oliver Glöckner; Dietrich Rebholz-Schuhmann; Jacek Blazewicz (Ecol. Informatics, 2012)

The Global Genome Biodiversity Network (GGBN) Data Standard specification. - Gabriele Dröge; Katharine Barker; Ole Seberg; Jonathan Coddington; Erica E. Benson; Walter G. Berendsohn; Boyke Bunk; Carol Butler; E. Margaret Casey; John Deck; Markus Döring; Paul Flemons; et al. (Database J. Biol. Databases Curation, 2016)

The antiSMASH database, a comprehensive database of microbial secondary metabolite biosynthetic gene clusters. - Kai Blin; Marnix H. Medema; Renzo Kottmann; Sang Yup Lee; Tilmann Weber (Nucleic Acids Res., 2017)

Developing Mobile Applications for Environmental and Biodiversity Citizen Science: Considerations and Recommendations. - Soledad Luna; Margaret Gold; Alexandra Albert; Luigi Ceccaroni; Bernat Claramunt; Olha Danylo; Muki Haklay; Renzo Kottmann; Christopher C. M. Kyba; Jaume Piera; Antonella Radicchi; Sven Schade; et al. (Multimedia Tools and Applications for Environmental & Biodiversity Informatics, 2018)

SeMoX: Standardizing Standardization - A Semantic-Driven Approach for Aligning Data Standards. - Andreas Schmitz; Cedric Pauken; Renzo Kottmann; Maria A. Wimmer (EGOV, 2025)