Exome sequence read depth methods for identifying copy number changes. - Latha Kadalayil; Sajjad Rafiq; Matthew J. J. Rose-Zerilli; Reuben J. Pengelly; Helen Parker; David Oscier; Jonathan C. Strefford; William J. Tapper; Jane Gibson; Sarah Ennis; Andrew Collins 001 (Briefings Bioinform., 2015)

Sequencing era methods for identifying signatures of selection in the genome. - Clare Horscroft; Sarah Ennis; Reuben J. Pengelly; Timothy J. Sluckin; Andrew Collins 001 (Briefings Bioinform., 2019)

Understanding the disease genome: gene essentiality and the interplay of selection, recombination and mutation. - Reuben J. Pengelly; Alejandra Vergara-Lope; Dareen Alyousfi; M. Reza Jabalameli; Andrew Collins 001 (Briefings Bioinform., 2019)

Linkage disequilibrium maps to guide contig ordering for genome assembly. - Reuben J. Pengelly; Andrew Collins 001 (Bioinform., 2019)

GenePy - a score for estimating gene pathogenicity in individuals using next-generation sequencing data. - Enrico Mossotto; J. J. Ashton; L. O'Gorman; Reuben J. Pengelly; R. M. Beattie; Ben D. MacArthur; Sarah Ennis (BMC Bioinform., 2019)

zalpha: an R package for the identification of regions of the genome under selection. - Clare Horscroft; Reuben J. Pengelly; Timothy J. Sluckin; Andrew Collins 001 (J. Open Source Softw., 2020)