BioASF: a framework for automatically generating executable pathway models specified in BioPAX. - Reza Haydarlou; Annika Jacobsen; Nicola Bonzanni; K. Anton Feenstra; Sanne Abeln; Jaap Heringa (Bioinform., 2016)

SeRenDIP-CE: sequence-based interface prediction for conformational epitopes. - Qingzhen Hou; Bas Stringer; Katharina Waury; Henriette Capel; Reza Haydarlou; Fuzhong Xue; Sanne Abeln; Jaap Heringa; K. Anton Feenstra (Bioinform., 2021)

PIPENN: protein interface prediction from sequence with an ensemble of neural nets. - Bas Stringer; Hans de Ferrante; Sanne Abeln; Jaap Heringa; K. Anton Feenstra; Reza Haydarlou (Bioinform., 2022)