Statistics of Knots, Geometry of Conformations, and Evolution of Proteins. - Rhonald C. Lua; Alexander Y. Grosberg (PLoS Comput. Biol., 2006)

PyETV: a PyMOL evolutionary trace viewer to analyze functional site predictions in protein complexes. - Rhonald C. Lua; Olivier Lichtarge (Bioinform., 2010)

ETAscape: analyzing protein networks to predict enzymatic function and substrates in Cytoscape. - Benjamin J. Bachman; Eric Venner; Rhonald C. Lua; Serkan Erdin; Olivier Lichtarge (Bioinform., 2012)

PyKnot: a PyMOL tool for the discovery and analysis of knots in proteins. - Rhonald C. Lua (Bioinform., 2012)

Accounting for epistatic interactions improves the functional analysis of protein structures. - Angela D. Wilkins; Eric Venner; David C. Marciano; Serkan Erdin; Benu Atri; Rhonald C. Lua; Olivier Lichtarge (Bioinform., 2013)

UET: a database of evolutionarily-predicted functional determinants of protein sequences that cluster as functional sites in protein structures. - Rhonald C. Lua; Stephen J. Wilson; Daniel M. Konecki; Angela D. Wilkins; Eric Venner; Daniel H. Morgan; Olivier Lichtarge (Nucleic Acids Res., 2016)

Discovery of Functional and Disease Pathways by Community Detection in Protein-Protein Interaction Networks. - Stephen J. Wilson; Angela D. Wilkins; Chih-Hsu Lin; Rhonald C. Lua; Olivier Lichtarge (PSB, 2017)

Fast Retinomorphic Event-Driven Representations for Video Gameplay and Action Recognition. - Huaijin G. Chen; Wanjia Liu; Rishab Goel; Rhonald C. Lua; Siddharth Mittal; Yuzhong Huang; Ashok Veeraraghavan; Ankit B. Patel (IEEE Trans. Computational Imaging, 2020)