Synima: a Synteny imaging tool for annotated genome assemblies. - Rhys A. Farrer (BMC Bioinform., 2017)

MARDy: Mycology Antifungal Resistance Database. - Anthony Nash; Thomas Sewell; Rhys A. Farrer; Alireza Abdolrasouli; Jennifer M. G. Shelton; Matthew C. Fisher; Johanna Rhodes (Bioinform., 2018)

HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypes. - Rhys A. Farrer (BMC Bioinform., 2021)