Predicting backbone Cα angles and dihedrals from protein sequences by stacked sparse auto-encoder deep neural network. - James G. Lyons; Abdollah Dehzangi; Rhys Heffernan; Alok Sharma; Kuldip K. Paliwal; Abdul Sattar 001; Yaoqi Zhou; Yuedong Yang (J. Comput. Chem., 2014)

Gram-positive and gram-negative subcellular localization using rotation forest and physicochemical-based features. - Abdollah Dehzangi; Sohrab Sohrabi; Rhys Heffernan; Alok Sharma; James G. Lyons; Kuldip K. Paliwal; Abdul Sattar 001 (BMC Bioinform., 2015)

Highly accurate sequence-based prediction of half-sphere exposures of amino acid residues in proteins. - Rhys Heffernan; Abdollah Dehzangi; James G. Lyons; Kuldip K. Paliwal; Alok Sharma; Jihua Wang; Abdul Sattar 001; Yaoqi Zhou; Yuedong Yang (Bioinform., 2016)

Capturing non-local interactions by long short-term memory bidirectional recurrent neural networks for improving prediction of protein secondary structure, backbone angles, contact numbers and solvent accessibility. - Rhys Heffernan; Yuedong Yang; Kuldip K. Paliwal; Yaoqi Zhou (Bioinform., 2017)

Sixty-five years of the long march in protein secondary structure prediction: the final stretch? - Yuedong Yang; Jianzhao Gao; Jihua Wang; Rhys Heffernan; Jack Hanson; Kuldip K. Paliwal; Yaoqi Zhou (Briefings Bioinform., 2018)

Single-sequence-based prediction of protein secondary structures and solvent accessibility by deep whole-sequence learning. - Rhys Heffernan; Kuldip K. Paliwal; James G. Lyons; Jaswinder Singh; Yuedong Yang; Yaoqi Zhou (J. Comput. Chem., 2018)

Detecting Proline and Non-Proline Cis Isomers in Protein Structures from Sequences Using Deep Residual Ensemble Learning. - Jaswinder Singh; Jack Hanson; Rhys Heffernan; Kuldip K. Paliwal; Yuedong Yang; Yaoqi Zhou (J. Chem. Inf. Model., 2018)