Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps. - Camden Jansen; Ricardo N. Ramirez; Nicole C. El-Ali; David Gomez-Cabrero; Jesper Tegnér; Matthias Merkenschlager; Ana Conesa; Ali Mortazavi (PLoS Comput. Biol., 2019)

DNA Rchitect: an R based visualizer for network analysis of chromatin interaction data. - Ricardo N. Ramirez; Karni Bedirian; Simon M. Gray; Alos B. Diallo (Bioinform., 2020)