In vivo and in silico analysis of PCNA ubiquitylation in the activation of the Post Replication Repair pathway in S. cerevisiae. - Flavio Amara; Riccardo Colombo; Paolo Cazzaniga; Dario Pescini; Attila Csikász-Nagy; Marco Falconi; Daniela Besozzi; Paolo Plevani (BMC Syst. Biol., 2013)

An ensemble approach to the study of the emergence of metabolic and proliferative disorders via Flux Balance Analysis. - Chiara Damiani; Riccardo Colombo; Sara Molinari; Dario Pescini; Daniela Gaglio; Marco Vanoni; Lilia Alberghina; Giancarlo Mauri (WIVACE, 2013)

Directionality in cardiovascular variability interactions during head-down tilt test. - Alberto Porta; Andrea Marchi; Vlasta Bari; Aparecida Maria Catai; Stefano Guzzetti; Ferdinando Raimondi; Riccardo Colombo (EMBC, 2014)

An ensemble evolutionary constraint-based approach to understand the emergence of metabolic phenotypes. - Chiara Damiani; Dario Pescini; Riccardo Colombo; Sara Molinari; Lilia Alberghina; Marco Vanoni; Giancarlo Mauri (Nat. Comput., 2014)

Proactive Particles in Swarm Optimization: A self-tuning algorithm based on Fuzzy Logic. - Marco S. Nobile; Gabriella Pasi; Paolo Cazzaniga; Daniela Besozzi; Riccardo Colombo; Giancarlo Mauri (FUZZ-IEEE, 2015)

SupraBiology 2014: Promoting UK-China collaboration on Systems Biology and High Performance Computing. - Ettore Murabito; Riccardo Colombo; Chengkun Wu; Malkhey Verma; Samrina Rehman; Jacky L. Snoep; Shaoliang Peng; Naiyang Guan; Xiangke Liao; Hans V. Westerhoff (Quant. Biol., 2015)

Constraining Mechanism Based Simulations to Identify Ensembles of Parametrizations to Characterize Metabolic Features. - Riccardo Colombo; Chiara Damiani; Giancarlo Mauri; Dario Pescini (CIBB, 2016)

COSYS: A Computational Infrastructure for Systems Biology. - Fabio Cumbo; Marco S. Nobile; Chiara Damiani; Riccardo Colombo; Giancarlo Mauri; Paolo Cazzaniga (CIBB, 2016)

Linking Alterations in Metabolic Fluxes with Shifts in Metabolite Levels by Means of Kinetic Modeling. - Chiara Damiani; Riccardo Colombo; Marzia Di Filippo; Dario Pescini; Giancarlo Mauri (WIVACE, 2016)

Constraint-Based Modeling and Simulation of Cell Populations. - Marzia Di Filippo; Chiara Damiani; Riccardo Colombo; Dario Pescini; Giancarlo Mauri (WIVACE, 2016)

Zooming-in on cancer metabolic rewiring with tissue specific constraint-based models. - Marzia Di Filippo; Riccardo Colombo; Chiara Damiani; Dario Pescini; Daniela Gaglio; Marco Vanoni; Lilia Alberghina; Giancarlo Mauri (Comput. Biol. Chem., 2016)

Poster: On the effects of cooperative platooning on traffic shock waves. - Luca Terruzzi; Riccardo Colombo; Michele Segata (VNC, 2017)

popFBA: tackling intratumour heterogeneity with Flux Balance Analysis. - Chiara Damiani; Marzia Di Filippo; Dario Pescini; Davide Maspero; Riccardo Colombo; Giancarlo Mauri (Bioinform., 2017)

A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect. - Chiara Damiani; Riccardo Colombo; Daniela Gaglio; Fabrizia Mastroianni; Dario Pescini; Hans V. Westerhoff; Giancarlo Mauri; Marco Vanoni; Lilia Alberghina (PLoS Comput. Biol., 2017)

Quantifying Net Synergy/Redundancy of Spontaneous Variability Regulation via Predictability and Transfer Entropy Decomposition Frameworks. - Alberto Porta; Vlasta Bari; Beatrice De Maria; Anielle C. M. Takahashi; Stefano Guzzetti; Riccardo Colombo; Aparecida Maria Catai; Ferdinando Raimondi; Luca Faes (IEEE Trans. Biomed. Eng., 2017)

Emerging ensembles of kinetic parameters to characterize observed metabolic phenotypes. - Riccardo Colombo; Chiara Damiani; David R. Gilbert; Monika Heiner; Giancarlo Mauri; Dario Pescini (BMC Bioinform., 2018)

Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization. - Marco S. Nobile; Paolo Cazzaniga; Daniela Besozzi; Riccardo Colombo; Giancarlo Mauri; Gabriella Pasi (Swarm Evol. Comput., 2018)

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism. - Chiara Damiani; Davide Maspero; Marzia Di Filippo; Riccardo Colombo; Dario Pescini; Alex Graudenzi; Hans V. Westerhoff; Lilia Alberghina; Marco Vanoni; Giancarlo Mauri (PLoS Comput. Biol., 2019)

The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System. - Davide Maspero; Chiara Damiani; Marco Antoniotti; Alex Graudenzi; Marzia Di Filippo; Marco Vanoni; Giulio Caravagna; Riccardo Colombo; Daniele Ramazzotti; Dario Pescini (Fundam. Informaticae, 2020)

Derangement of Cardiovascular Regulatory Mechanisms in COVID-19 Patients in Intensive Care Unit and its Association with Mortality. - Francesca Gelpi; Vlasta Bari; Beatrice Cairo; Beatrice De Maria; Noemi Cornara; Riccardo Colombo; Alberto Porta (CinC, 2022)

Cardiorespiratory coupling in mechanically ventilated patients studied via synchrogram analysis. - Davide Ottolina; Beatrice Cairo; Tommaso Fossali; Claudio Mazzucco; Antonio Castelli; Roberto Rech; Emanuele Catena; Alberto Porta; Riccardo Colombo (Medical Biol. Eng. Comput., 2023)