Distinct distance sets in a graph. - Richard A. Gibbs; Peter J. Slater (Discret. Math., 1991)

Accurate determination of DNA in agarose gels using the novel algorithm GelScann(1.0). - Michael L. Metzker; Kyle M. Allain; Richard A. Gibbs (Comput. Appl. Biosci., 1995)

The Human Transcript Database: a catalogue of full length cDNA inserts. - John Bouck; Michael P. McLeod; Kim Worley; Richard A. Gibbs (Bioinform., 2000)

Computational and Conformational Evaluation of FTase Alternative Substrates: Insight into a Novel Enzyme Binding Pocket. - Brian S. Henriksen; Todd J. Zahn; Jeffrey D. Evanseck; Steven M. Firestine; Richard A. Gibbs (J. Chem. Inf. Model., 2005)

SNPdetector: A Software Tool for Sensitive and Accurate SNP Detection. - Jinghui Zhang; David A. Wheeler; Imtiaz Yakub; Sharon Wei; Raman Sood; William Rowe; Paul P. Liu; Richard A. Gibbs; Kenneth H. Buetow (PLoS Comput. Biol., 2005)

An integrative variant analysis suite for whole exome next-generation sequencing data. - Danny Challis; Jin Yu 003; Uday S. Evani; Andrew R. Jackson; Sameer Paithankar; Cristian Coarfa; Aleksandar Milosavljevic; Richard A. Gibbs; Fuli Yu (BMC Bioinform., 2012)

Launching genomics into the cloud: deployment of Mercury, a next generation sequence analysis pipeline. - Jeffrey G. Reid; Andrew Carroll; Narayanan Veeraraghavan; Mahmoud Dahdouli; Andreas Sundquist; Adam C. English; Matthew N. Bainbridge; Simon White; William J. Salerno; Christian Buhay; Fuli Yu; Donna M. Muzny; et al. (BMC Bioinform., 2014)

Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR). - Xinxia Peng; Jean Thierry-Mieg; Danielle Thierry-Mieg; Andrew Nishida; Lenore Pipes; Marjan Bozinoski; Matthew J. Thomas; Sara Kelly; Jeffrey M. Weiss; Muthuswamy Raveendran; Donna M. Muzny; Richard A. Gibbs; et al. (Nucleic Acids Res., 2015)

DNAism: exploring genomic datasets on the web with Horizon Charts. - David Rio Deiros; Richard A. Gibbs; Jeffrey Rogers (BMC Bioinform., 2016)

A hybrid computational strategy to address WGS variant analysis in >5000 samples. - Zhuoyi Huang; Navin Rustagi; Narayanan Veeraraghavan; Andrew Carroll; Richard A. Gibbs; Eric Boerwinkle; Manjunath Gorentla Venkata; Fuli Yu (BMC Bioinform., 2016)

ITD assembler: an algorithm for internal tandem duplication discovery from short-read sequencing data. - Navin Rustagi; Oliver A. Hampton; Jie Li; Liu Xi; Richard A. Gibbs; Sharon E. Plon; Marek Kimmel; David A. Wheeler (BMC Bioinform., 2016)

SV-STAT accurately detects structural variation via alignment to reference-based assemblies. - Caleb F. Davis; Deborah I. Ritter; David A. Wheeler; Hongmei Wang; Yan Ding; Shannon P. Dugan; Matthew N. Bainbridge; Donna M. Muzny; Pulivarthi H. Rao; Tsz-Kwong Man; Sharon E. Plon; Richard A. Gibbs; et al. (Source Code Biol. Medicine, 2016)

SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data. - Yong Chen 016; Li Zhao; Yi Wang; Ming Cao 005; Violet Gelowani; Mingchu Xu; Smriti A. Agrawal; Yumei Li 007; Stephen P. Daiger; Richard A. Gibbs; Fei Wang 017; Rui Chen 013 (BMC Bioinform., 2017)

Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example. - Samuel J. Aronson; Lawrence J. Babb; Darren C. Ames; Richard A. Gibbs; Eric Venner; John J. Connelly; Keith Marsolo; Chunhua Weng; Marc S. Williams; Andrea L. Hartzler; Wayne H. Liang; James D. Ralston; et al. (J. Am. Medical Informatics Assoc., 2018)

ARBoR: an identity and security solution for clinical reporting. - Eric Venner; Mullai Murugan; Walker Hale; Jordan M. Jones; Shan Lu; Victoria Yi; Richard A. Gibbs (J. Am. Medical Informatics Assoc., 2019)

Genomic considerations for FHIR®; eMERGE implementation lessons. - Mullai Murugan; Lawrence J. Babb; Casey Overby Taylor; Luke V. Rasmussen; Robert R. Freimuth; Eric Venner; Fei Yan; Victoria Yi; Stephen J. Granite; Hana Zouk; Samuel J. Aronson; Kevin Power; et al. (J. Biomed. Informatics, 2021)

Empowering personalized pharmacogenomics with generative AI solutions. - Mullai Murugan; Bo Yuan; Eric Venner; Christie M. Ballantyne; Katherine M. Robinson; James C. Coons; Liwen Wang; Philip E. Empey; Richard A. Gibbs (J. Am. Medical Informatics Assoc., 2024)

A statistical framework for multi-trait rare variant analysis in large-scale whole-genome sequencing studies. - Xihao Li; Han Chen; Margaret Sunitha Selvaraj; Eric Van Buren; Hufeng Zhou; Yuxuan Wang 008; Ryan Sun; Zachary R. McCaw; Zhi Yu; Min-Zhi Jiang; Daniel DiCorpo; Sheila M. Gaynor; et al. (Nat. Comput. Sci., 2025)