A Bayesian Approach to Sequence Alignment Algorithms for Protein Structure Recognition. - Richard A. Goldstein; Zaida Luthey-Schulten; Peter G. Wolynes (HICSS (5), 1994)

Beyond mutation matrices: physical-chemistry based evolutionary models. - Jeffrey M. Koshi; David P. Mindell; Richard A. Goldstein (RECOMB, 1998)

Optimizing for success: a new score function for distantly related protein sequence comparison. - Maricel Kann; Richard A. Goldstein (RECOMB, 2000)

Structures, Phylogenies, and Genomes: The Integrated Study of Protein Evolution - Session Introduction. - Richard A. Goldstein; David D. Pollock; Jeffrey L. Thorne (Pacific Symposium on Biocomputing, 2001)

Analyzing Rate Heterogeneity During Protein Evolution. - Jeffrey M. Koshi; Richard A. Goldstein (Pacific Symposium on Biocomputing, 2001)

Using Evolutionary Methods to Study G-Protein Coupled Receptors. - Orkun S. Soyer; Matthew W. Dimmic; Richard R. Neubig; Richard A. Goldstein (Pacific Symposium on Biocomputing, 2002)

OPTIMA: A New Score Function for the Detection of Remote Homologs. - Maricel Kann; Richard A. Goldstein (Mathematical Methods for Protein Structure Analysis and Design, 2003)

Evolutionary Perspectives on Protein Thermodynamics. - Richard A. Goldstein (International Conference on Computational Science, 2004)

Performance of an iterated T-HMM for homology detection. - Bin Qian; Richard A. Goldstein (Bioinform., 2004)

Assessing the Accuracy of Ancestral Protein Reconstruction Methods. - Paul D. Williams; David D. Pollock; Benjamin P. Blackburne; Richard A. Goldstein (PLoS Comput. Biol., 2006)

In silico evolution of chemotaxis. - Richard A. Goldstein; Orkun S. Soyer (ALIFE, 2008)

Evolution of Taxis Responses in Virtual Bacteria: Non-Adaptive Dynamics. - Richard A. Goldstein; Orkun S. Soyer (PLoS Comput. Biol., 2008)

Identifying Changes in Selective Constraints: Host Shifts in Influenza. - Asif U. Tamuri; Mario dos Reis; Alan J. Hay; Richard A. Goldstein (PLoS Comput. Biol., 2009)

In Silico Biology. - Richard A. Goldstein; Phil Husbands; Chrisantha Fernando; Dov J. Stekel (Pacific Symposium on Biocomputing, 2010)

Deciphering the Swine-Flu Pandemics of 1918 and 2009. - Richard A. Goldstein; Mario dos Reis; Asif U. Tamuri; Alan J. Hay (RECOMB, 2010)

The Neuronal Replicator Hypothesis. - Chrisantha Fernando; Richard A. Goldstein; Eörs Szathmáry (Neural Comput., 2010)

The Evolution of Collective Restraint: Policing and Obedience among Non-conjugative Plasmids. - Kyriakos Kentzoglanakis; Diana García López; Sam P. Brown; Richard A. Goldstein (PLoS Comput. Biol., 2013)

SubRecon: ancestral reconstruction of amino acid substitutions along a branch in a phylogeny. - Christopher Monit; Richard A. Goldstein (Bioinform., 2018)

Biophysics and population size constrains speciation in an evolutionary model of developmental system drift. - Bhavin S. Khatri; Richard A. Goldstein (PLoS Comput. Biol., 2019)