MADGE: scalable distributed data management software for cDNA microarrays. - Richard A. McIndoe; Aaron Lanzen; Kimberly Hurtz (Bioinform., 2003)

caBIONet - A .NET wrapper to access and process genomic data stored at the National Cancer Institute's Center for Bioinformatics databases. - Piotr Kraj; Richard A. McIndoe (Bioinform., 2005)

ParaKMeans: Implementation of a parallelized K-means algorithm suitable for general laboratory use. - Piotr Kraj; Ashok Sharma; Nikhil Garge; Robert H. Podolsky; Richard A. McIndoe (BMC Bioinform., 2008)

A modified hyperplane clustering algorithm allows for efficient and accurate clustering of extremely large datasets. - Ashok Sharma; Robert H. Podolsky; Jieping Zhao; Richard A. McIndoe (Bioinform., 2009)

ParaSAM: a parallelized version of the significance analysis of microarrays algorithm. - Ashok Sharma; Jieping Zhao; Robert H. Podolsky; Richard A. McIndoe (Bioinform., 2010)