Accelerating the reconstruction of genome-scale metabolic networks. - Richard A. Notebaart; Frank H. J. van Enckevort; Christof Francke; Roland J. Siezen; Bas Teusink (BMC Bioinform., 2006)

Co-Regulation of Metabolic Genes Is Better Explained by Flux Coupling Than by Network Distance. - Richard A. Notebaart; Bas Teusink; Roland J. Siezen; Balázs Papp (PLoS Comput. Biol., 2008)

Understanding the Adaptive Growth Strategy of Lactobacillus plantarum by In Silico Optimisation. - Bas Teusink; Anne Wiersma; Leo Jacobs; Richard A. Notebaart; Eddy J. Smid (PLoS Comput. Biol., 2009)

Inferring Metabolic States in Uncharacterized Environments Using Gene-Expression Measurements. - Sergio Rossell; Martijn A. Huynen; Richard A. Notebaart (PLoS Comput. Biol., 2013)

Underground metabolism as a rich reservoir for pathway engineering. - Szabolcs Cselgo Kovács; Balázs Szappanos; Roland Tengölics; Richard A. Notebaart; Balázs Papp (Bioinform., 2022)

Integrative systems biology approaches for analyzing microbiome dysbiosis and species interactions. - Syed Sabih Ur Rehman; Muhammad Ibtisam Nasar; Cristina S. Mesquita; Souhaila Al Khodor; Richard A. Notebaart; Sascha Ott; Sunil Mundra; Ramesh P. Arasardanam; Khalid Muhammad; Mohammad Tauqeer Alam (Briefings Bioinform., 2025)