Conflation System MBP. - Richard D. Boyce; Richard Chase (CISST, 2003)

Qualitative Pharmacokinetic Modeling of Drugs. - Richard D. Boyce; Carol Collins; John R. Horn; Ira J. Kalet (AMIA, 2005)

Modeling Drug Mechanism Knowledge Using Evidence and Truth Maintenance. - Richard D. Boyce; Carol Collins; John R. Horn; Ira Kalet (IEEE Trans. Inf. Technol. Biomed., 2007)

Computing with evidence: Part I: A drug-mechanism evidence taxonomy oriented toward confidence assignment. - Richard D. Boyce; Carol Collins; John R. Horn; Ira Kalet (J. Biomed. Informatics, 2009)

Computing with evidence: Part II: An evidential approach to predicting metabolic drug-drug interactions. - Richard D. Boyce; Carol Collins; John R. Horn; Ira Kalet (J. Biomed. Informatics, 2009)

iCODEHOP: a new interactive program for designing COnsensus-DEgenerate Hybrid Oligonucleotide Primers from multiply aligned protein sequences. - Richard D. Boyce; Parmit K. Chilana; Timothy M. Rose (Nucleic Acids Res., 2009)

Leveraging the semantic web and natural language processing to enhance drug-mechanism knowledge in drug product labels. - Richard D. Boyce; Henk Harkema; Mike Conway (IHI, 2010)

The Influence of Drug Terminologies on the Performance of the NCBO Annotator When Used to Identify Drug Entities in Drug Product Labels. - Robert Guzman; Richard D. Boyce (AMIA, 2012)

Using Natural Language Processing to Extract Drug-Drug Interaction Information from Package Inserts. - Richard D. Boyce; Gregory Gardner; Henk Harkema (BioNLP@HLT-NAACL, 2012)

Emerging practices for mapping and linking life sciences data using RDF - A case series. - M. Scott Marshall; Richard D. Boyce; Helena F. Deus; Jun Zhao 003; Egon L. Willighagen; Matthias Samwald; Elgar Pichler; Janos G. Hajagos; Eric Prud'hommeaux; Susie Stephens (J. Web Semant., 2012)

An RDF/OWL Knowledge Base for Query Answering and Decision Support in Clinical Pharmacogenetics. - Matthias Samwald; Robert R. Freimuth; Joanne S. Luciano; Simon M. Lin; Robert L. Powers; M. Scott Marshall; Klaus-Peter Adlassnig; Michel Dumontier; Richard D. Boyce (MedInfo, 2013)

UWM-TRIADS: Classifying Drug-Drug Interactions with Two-Stage SVM and Post-Processing. - Majid Rastegar-Mojarad; Richard D. Boyce; Rashmi Prasad (SemEval@NAACL-HLT, 2013)

Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness. - Richard D. Boyce; John R. Horn; Oktie Hassanzadeh; Anita de Waard; Jodi Schneider; Joanne S. Luciano; Majid Rastegar-Mojarad; Maria Liakata (J. Biomed. Semant., 2013)

Wearable low-latency sleep stage classifier. - Aditi Chemparathy; Hossein Kassiri; Muhammad Tariqus Salam; Richard D. Boyce; Fadime Bekmambetova; Antoine Adamantidis; Roman Genov (BioCAS, 2014)

Using the Micropublications Ontology and the Open Annotation Data Model to Represent Evidence within a Drug-Drug Interaction Knowledge Base. - Jodi Schneider; Paolo Ciccarese; Tim Clark; Richard D. Boyce (LISC@ISWC, 2014)

OHDSI: An Open-Source Platform for Observational Data Analytics and Collaborative Research. - Jon D. Duke; Frank J. DeFalco; Chris Knoll; Vojtech Huser; Richard D. Boyce; Patrick B. Ryan (AMIA, 2015)

Formalizing Knowledge and Evidence about Potential Drug-drug Interactions. - Jodi Schneider; Mathias Brochhausen; Samuel Rosko; Paolo Ciccarese; William R. Hogan; Daniel C. Malone; Yifan Ning; Tim Clark; Richard D. Boyce (BDM2I@ISWC, 2015)

Toward a complete dataset of drug-drug interaction information from publicly available sources. - Serkan Ayvaz; John R. Horn; Oktie Hassanzadeh; Qian Zhu 003; Johann Stan; Nicholas P. Tatonetti; Santiago Vilar; Mathias Brochhausen; Matthias Samwald; Majid Rastegar-Mojarad; Michel Dumontier; Richard D. Boyce (J. Biomed. Informatics, 2015)

Pharmacogenomic knowledge representation, reasoning and genome-based clinical decision support based on OWL 2 DL ontologies. - Matthias Samwald; José Antonio Miñarro-Giménez; Richard D. Boyce; Robert R. Freimuth; Klaus-Peter Adlassnig; Michel Dumontier (BMC Medical Informatics Decis. Mak., 2015)

Adding Evidence Type Representation to DIDEO. - Mathias Brochhausen; Philip E. Empey; Jodi Schneider; William R. Hogan; Richard D. Boyce (ICBO/BioCreative, 2016)

Bringing clinical pharmacogenomics information to pharmacists: A qualitative study of information needs and resource requirements. - Katrina M. Romagnoli; Richard D. Boyce; Philip E. Empey; Solomon Adams; Harry Hochheiser (Int. J. Medical Informatics, 2016)

Toward a reliable and interoperable public repository for natural product drug interaction study data. - Richard D. Boyce; Isabelle Ragueneau-Majlessi; Jingjing Yu; Jessica Sontheimer; Chris Kinsella; Mathias Brochhausen; John Judkins; Bruce Pinkleton; Rebecca L. Cooney; Mary Paine; Jeannine McCune (AMIA, 2017)

Extraction of Drug-Drug Interactions from Drug Product Labeling Tables. - Nikola Milosevic; Anay Gupta; Austin Chen; Steven DeMarco; Joshua P. Le; Jodi Schneider; Yifan Ning; Goran Nenadic; Richard D. Boyce (CRI, 2017)

Toward shareable individualized drug interaction alerts. - Samuel C. Rosko; Philip Hansten; John R. Horn; Daniel C. Malone; Andrew Romero; Richard D. Boyce (CRI, 2017)

Formalizing Evidence Type Definitions for Drug-Drug Interaction Studies to Improve Evidence Base Curation. - Joseph Utecht; Mathias Brochhausen; John Judkins; Jodi Schneider; Richard D. Boyce (MedInfo, 2017)

Automated Screening of Emergency Department Notes for Drug-Associated Bleeding Adverse Events Occurring in Older Adults. - Richard D. Boyce; Jeremy Jao; Taylor Miller; Sandra L. Kane-Gill (Appl. Clin. Inform., 2017)

Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data. - Richard D. Boyce; Erica A. Voss; Vojtech Huser; Lee Evans; Christian G. Reich; Jon D. Duke; Nicholas P. Tatonetti; Tal Lorberbaum; Michel Dumontier; Manfred Hauben; Magnus Wallberg; Lili Peng; et al. (J. Biomed. Semant., 2017)

Design and evaluation of a pharmacogenomics information resource for pharmacists. - Katrina M. Romagnoli; Richard D. Boyce; Philip E. Empey; Yifan Ning; Solomon Adams; Harry Hochheiser (J. Am. Medical Informatics Assoc., 2017)

Accuracy of an automated knowledge base for identifying drug adverse reactions. - Erica A. Voss; Richard D. Boyce; Patrick B. Ryan; Johan van der Lei; Peter R. Rijnbeek; Martijn J. Schuemie (J. Biomed. Informatics, 2017)

Information needs for making clinical recommendations about potential drug-drug interactions: a synthesis of literature review and interviews. - Katrina M. Romagnoli; Scott D. Nelson; Lisa Hines; Philip E. Empey; Richard D. Boyce; Harry Hochheiser (BMC Medical Informatics Decis. Mak., 2017)

Electronic Sleep Stage Classifiers: A Survey and VLSI Design Methodology. - Hossein Kassiri; Aditi Chemparathy; Muhammad Tariqus Salam; Richard D. Boyce; Antoine Adamantidis; Roman Genov (IEEE Trans. Biomed. Circuits Syst., 2017)

Developing User Personas to Aid in the Design of a User-Centered Natural Product-Drug Interaction Information Resource for Researchers. - Richard D. Boyce; Isabelle Ragueneau-Majlessi; Jingjing Yu; Jessica Sontheimer; Chris Kinsella; Eric Chou; Mathias Brochhausen; John Judkins; Brandon T. Gufford; Bruce Pinkleton; Rebecca L. Cooney; Mary Paine; et al. (AMIA, 2018)

Adverse Reactions and Drug-Drug Interaction Extraction tracks at the Text Analysis Conference (TAC). - Dina Demner-Fushman; Joseph M. Tonning; Kin Wah Fung; Phong Do; Richard D. Boyce; Kirk Roberts (AMIA, 2018)

Overview of the TAC 2018 Drug-Drug Interaction Extraction from Drug Labels Track. - Dina Demner-Fushman; Kin Wah Fung; Phong Do; Richard D. Boyce; Travis R. Goodwin (TAC, 2018)

Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse. - John Judkins; Jessica Tay-Sontheimer; Richard D. Boyce; Mathias Brochhausen (J. Biomed. Semant., 2018)

A Proposal for Determining the Evidence Types of Biomedical Documents Using a Drug-drug Interaction Ontology and Machine Learning. - Linh Hoang; Richard D. Boyce; Mathias Brochhausen; Joseph Utecht; Jodi Schneider (AAAI Spring Symposium: Combining Machine Learning with Knowledge Engineering, 2019)

Implementation of Clinical Decision Support Services to Detect Potential Drug-Drug Interaction Using Clinical Quality Language. - Binh-Phi Nguyen; Thomas J. Reese; Stefan Decker; Daniel C. Malone; Richard D. Boyce; Oya Beyan (MedInfo, 2019)

Open Source Software Sustainability Models: Initial White Paper from the Information Technology for Cancer Research Sustainability and Industry Partnership Work Group. - Y. Ye; Richard D. Boyce; M. K. Davis; Keith O. Elliston; Christos Davatzikos; Andrey Fedorov; Jean-Christophe Fillion-Robin; Ian T. Foster; John R. Gilbertson; Mervi Heiskanen; Juli D. Klemm; Andras Lasso; et al. (CoRR, 2019)

Automatically classifying the evidence type of drug-drug interaction research papers as a step toward computer supported evidence curation. - Linh K. Hoang; Richard D. Boyce; Nigel Bosch; Britney Stottlemyer; Mathias Brochhausen; Jodi Schneider (AMIA, 2020)

Mapping Dental Diagnostic Concepts to SNOMED CT: A Pilot Study. - Yingci Liu; Smitha Edakalavan; Richard D. Boyce (AMIA, 2020)

Testing the face validity and inter-rater agreement of a simple approach to drug-drug interaction evidence assessment. - Amy J. Grizzle; Lisa E. Hines; Daniel C. Malone; Olga Kravchenko; Harry Hochheiser; Richard D. Boyce (J. Biomed. Informatics, 2020)

Overriding Drug-Drug Interaction Alerts in Clinical Decision Support Systems: A Scoping Review. - Lorenzo Villa Zapata; Vignesh Subbian; Richard D. Boyce; Philip D. Hansten; John R. Horn; Sheila M. Gephart; Andrew Romero; Daniel C. Malone (MedInfo, 2021)

Introducing Information Retrieval for Biomedical Informatics Students. - Sanya Bathla Taneja; Richard D. Boyce; William T. Reynolds; Denis Newman-Griffis (CoRR, 2021)

Using computable knowledge mined from the literature to elucidate confounders for EHR-based pharmacovigilance. - Scott A. Malec; Peng Wei; Elmer V. Bernstam; Richard D. Boyce; Trevor Cohen (J. Biomed. Informatics, 2021)

Standardizing Natural Products in Adverse Event Reports with Siamese Recurrent Networks. - Tanupat Boonchalermvichien; Sanya Bathla Taneja; Sandra Clark Karcher; Richard D. Boyce (AMIA, 2022)

Developing and Evaluation of Computational Phenotypes of Metastatic Breast Cancer Using All of Us Data. - Chenyu Li; Israel Dilan-Pantojas; Shyam Visweswaran; Michael J. Becich; Xia Jiang; Richard D. Boyce (AMIA, 2022)

Evaluation of Shared Decision-Making for Concomitant Warfarin and NSAID Medications using the DDInteract App. - Ainhoa Gomez Lumbreras; Thomas J. Reese; Guilherme Del Fiol; Jason Hurwitz; Kensaku Kawamoto; Mary Brown; Richard D. Boyce; Daniel C. Malone (AMIA, 2022)

Ontologizing Health Systems Data at Scale: Making Translational Discovery a Reality. - Tiffany J. Callahan; Adrianne L. Stefanski; Jordan M. Wyrwa; Chenjie Zeng; Anna Ostropolets; Juan M. Banda; William A. Baumgartner Jr.; Richard D. Boyce; Elena Casiraghi; Ben D. Coleman; Janine H. Collins; Sara J. Deakyne Davies; et al. (CoRR, 2022)

Developing a Knowledge Graph Framework for Pharmacokinetic Natural Product-Drug Interactions. - Sanya Bathla Taneja; Tiffany J. Callahan; Mary F. Paine; Sandra L. Kane-Gill; Halil Kilicoglu; Marcin P. Joachimiak; Richard D. Boyce (CoRR, 2022)

Coordinated use of Health Level 7 standards to support clinical decision support: Case study with shared decision making and drug-drug interactions. - Henrik Thiess; Guilherme Del Fiol; Daniel C. Malone; Ryan Cornia; Max Sibilla; Bryn Rhodes; Richard D. Boyce; Kensaku Kawamoto; Thomas J. Reese (Int. J. Medical Informatics, 2022)

Falls prediction using the nursing home minimum dataset. - Richard D. Boyce; Olga Kravchenko; Subashan Perera; Jordan F. Karp; Sandra L. Kane-Gill; Charles F. Reynolds; Steven M. Albert; Steven M. Handler (J. Am. Medical Informatics Assoc., 2022)

An Open-Source Knowledge Graph Ecosystem for the Life Sciences. - Tiffany J. Callahan; Ignacio J. Tripodi; Adrianne L. Stefanski; Luca Cappelletti; Sanya Bathla Taneja; Jordan M. Wyrwa; Elena Casiraghi; Nicolas A. Matentzoglu; Justin T. Reese; Jonathan C. Silverstein; Charles Tapley Hoyt; Richard D. Boyce; et al. (CoRR, 2023)

Ontologizing health systems data at scale: making translational discovery a reality. - Tiffany J. Callahan; Adrianne L. Stefanski; Jordan M. Wyrwa; Chenjie Zeng; Anna Ostropolets; Juan M. Banda; William A. Baumgartner Jr.; Richard D. Boyce; Elena Casiraghi; Ben D. Coleman; Janine H. Collins; Sara J. Deakyne Davies; et al. (npj Digit. Medicine, 2023)

Developing a Knowledge Graph for Pharmacokinetic Natural Product-Drug Interactions. - Sanya Bathla Taneja; Tiffany J. Callahan; Mary F. Paine; Sandra L. Kane-Gill; Halil Kilicoglu; Marcin P. Joachimiak; Richard D. Boyce (J. Biomed. Informatics, 2023)

Causal feature selection using a knowledge graph combining structured knowledge from the biomedical literature and ontologies: A use case studying depression as a risk factor for Alzheimer's disease. - Scott A. Malec; Sanya Bathla Taneja; Steven M. Albert; C. Elizabeth Shaaban; Helmet T. Karim; Arthur S. Levine; Paul Munro; Tiffany J. Callahan; Richard D. Boyce (J. Biomed. Informatics, 2023)

Tempo: Helping Data Scientists and Domain Experts Collaboratively Specify Predictive Modeling Tasks. - Venkatesh Sivaraman; Anika Vaishampayan; Xiaotong Li; Brian R. Buck; Ziyong Ma; Richard D. Boyce; Adam Perer (CHI, 2025)