ESTIMA, a tool for EST management in a multi-project environment. - Charu G. Kumar; Richard D. LeDuc; George Gong; Levan Roinishivili; Harris A. Lewin; Lei Liu (BMC Bioinform., 2004)

ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry. - Richard D. LeDuc; Gregory K. Taylor; Yong-Bin Kim; Thomas E. Januszyk; Lee H. Bynum; Joseph V. Sola; John S. Garavelli; Neil L. Kelleher (Nucleic Acids Res., 2004)

ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry. - Leonid Zamdborg; Richard D. LeDuc; Kevin J. Glowacz; Yong-Bin Kim; Vinayak Viswanathan; Ian T. Spaulding; Bryan P. Early; Eric J. Bluhm; Shannee Babai; Neil L. Kelleher (Nucleic Acids Res., 2007)

Trinity RNA-Seq assembler performance optimization. - Robert Henschel; Matthias Lieber; Le-Shin Wu; Phillip M. Nista; Brian J. Haas; Richard D. LeDuc (XSEDE, 2012)

National Center for Genome Analysis support leverages XSEDE to support life science research. - Richard D. LeDuc; Thomas G. Doak; Le-Shin Wu; Philip D. Blood; Carrie L. Ganote; Matthew Vaughn (XSEDE, 2013)

Leveraging the national cyberinfrastructure for biomedical research. - Richard D. LeDuc; Matthew Vaughn; John M. Fonner; Michael Sullivan; James G. Williams 003; Philip D. Blood; James Taylor 001; William K. Barnett (J. Am. Medical Informatics Assoc., 2014)

The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms. - Michael A. R. Hollas; Matthew T. Robey; Ryan T. Fellers; Richard D. LeDuc; Paul M. Thomas; Neil L. Kelleher (Nucleic Acids Res., 2022)