Software for genome mapping by fingerprinting techniques. - John Sulston; Frank Mallett; Rodger Staden; Richard Durbin; Terry Horsnell; Alan Coulson (Comput. Appl. Biosci., 1988)

Product Units with Trainable Exponents and Multi-Layer Networks. - Richard Durbin; David E. Rumelhart (NATO Neurocomputing, 1989)

Image analysis of restriction enzyme fingerprint autoradiograms. - John Sulston; Frank Mallett; Richard Durbin; Terry Horsnell (Comput. Appl. Biosci., 1989)

Product Units: A Computationally Powerful and Biologically Plausible Extension to Backpropagation Networks. - Richard Durbin; David E. Rumelhart (Neural Comput., 1989)

An Analysis of the Elastic Net Approach to the Traveling Salesman Problem. - Richard Durbin; Richard Szeliski; Alan L. Yuille (Neural Comput., 1989)

An Expert System for Processing Sequence Homology Data. - Erik L. L. Sonnhammer; Richard Durbin (ISMB, 1994)

A workbench for large-scale sequence homology analysis. - Erik L. L. Sonnhammer; Richard Durbin (Comput. Appl. Biosci., 1994)

Maximum Discrimination Hidden Markov Models of Sequence Consensus. - Sean R. Eddy; Graeme J. Mitchison; Richard Durbin (J. Comput. Biol., 1995)

Method for Calculation of Probability of Matching a Bounded Regular Expression in a Random Data String. - Roger F. Sewell; Richard Durbin (J. Comput. Biol., 1995)

Dynamite: A Flexible Code Generating Language for Dynamic Programming Methods Used in Sequence Comparison. - Ewan Birney; Richard Durbin (ISMB, 1997)

Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids - Richard Durbin; Sean R. Eddy; Anders Krogh; Graeme J. Mitchison (Cambridge University Press, 1998)

Dynamic Programming Alignment Accuracy. - Ian Holmes; Richard Durbin (J. Comput. Biol., 1998)

Pfam: multiple sequence alignments and HMM-profiles of protein domains. - Erik L. L. Sonnhammer; Sean R. Eddy; Ewan Birney; Alex Bateman; Richard Durbin (Nucleic Acids Res., 1998)

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins. - Alex Bateman; Ewan Birney; Richard Durbin; Sean R. Eddy; Robert D. Finn; Erik L. L. Sonnhammer (Nucleic Acids Res., 1999)

InterPro-an integrated documentation resource for protein families, domains and functional sites. - Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; Florence Corpet; Michael D. R. Croning; Richard Durbin; Laurent Falquet; et al. (Bioinform., 2000)

The Pfam Protein Families Database. - Alex Bateman; Ewan Birney; Richard Durbin; Sean R. Eddy; Kevin L. Howe; Erik L. L. Sonnhammer (Nucleic Acids Res., 2000)

Interpreting the Human Genome Sequence, Using Stochastic Grammars. - Richard Durbin (ACL, 2001)

The InterPro database, an integrated documentation resource for protein families, domains and functional sites. - Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; Ewan Birney; Margaret Biswas; Philipp Bucher; Lorenzo Cerutti; Florence Corpet; Michael D. R. Croning; Richard Durbin; Laurent Falquet; et al. (Nucleic Acids Res., 2001)

WormBase: network access to the genome and biology of Caenorhabditis elegans. - Lincoln Stein; Paul W. Sternberg; Richard Durbin; Jean Thierry-Mieg; John Spieth (Nucleic Acids Res., 2001)

Invited Lecture - Accelerating Smith-Waterman Searches. - Gene Myers; Richard Durbin (WABI, 2002)

InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; Emmanuel Courcelle; et al. (Briefings Bioinform., 2002)

QuickTree: building huge Neighbour-Joining trees of protein sequences. - Kevin L. Howe; Alex Bateman; Richard Durbin (Bioinform., 2002)

Comparative ab initio prediction of gene structures using pair HMMs. - Irmtraud M. Meyer; Richard Durbin (Bioinform., 2002)

The Pfam Protein Families Database. - Alex Bateman; Ewan Birney; Lorenzo Cerutti; Richard Durbin; Laurence Ettwiller; Sean R. Eddy; Sam Griffiths-Jones; Kevin L. Howe; Mhairi Marshall; Erik L. L. Sonnhammer (Nucleic Acids Res., 2002)

The Ensembl genome database project. - Tim J. P. Hubbard; Daniel Barker; Ewan Birney; Graham Cameron; Yuan Chen 007; Laura Clarke; Tony Cox 001; James A. Cuff; Val Curwen; Thomas A. Down; Richard Durbin; Eduardo Eyras; et al. (Nucleic Acids Res., 2002)

A Table-Driven, Full-Sensitivity Similarity Search Algorithm. - Gene Myers; Richard Durbin (J. Comput. Biol., 2003)

Ensembl 2002: accommodating comparative genomics. - Michele E. Clamp; T. Daniel Andrews; Daniel Barker; Paul Bevan 001; Graham Cameron; Yuan Chen 007; Laura Clarke; Tony Cox 001; James A. Cuff; Val Curwen; Thomas A. Down; Richard Durbin; et al. (Nucleic Acids Res., 2003)

WormBase: a cross-species database for comparative genomics. - Todd W. Harris; Raymond Y. N. Lee; Erich M. Schwarz; Keith Bradnam; Daniel Lawson; Wen J. Chen; Darin Blasiar; Eimear Kenny; Fiona Cunningham; Ranjana Kishore; Juancarlos Chan; Hans-Michael Müller; et al. (Nucleic Acids Res., 2003)

The InterPro Database, 2003 brings increased coverage and new features. - Nicola J. Mulder; Rolf Apweiler; Terri K. Attwood; Amos Bairoch; Daniel Barrell; Alex Bateman; David Binns; Margaret Biswas; Paul Bradley; Peer Bork; Philipp Bucher; Richard R. Copley; et al. (Nucleic Acids Res., 2003)

Improved techniques for the identification of pseudogenes. - Lachlan James M. Coin; Richard Durbin (ISMB/ECCB (Supplement of Bioinformatics), 2004)

Enhanced protein domain discovery using taxonomy. - Lachlan James M. Coin; Alex Bateman; Richard Durbin (BMC Bioinform., 2004)

The Pfam protein families database. - Alex Bateman; Lachlan James M. Coin; Richard Durbin; Robert D. Finn; Volker Hollich; Sam Griffiths-Jones; Ajay Khanna; Mhairi Marshall; Simon Moxon; Erik L. L. Sonnhammer; David J. Studholme; Corin Yeats; et al. (Nucleic Acids Res., 2004)

Ensembl 2004. - Ewan Birney; T. Daniel Andrews; Paul Bevan 001; Mario Cáccamo; Graham Cameron; Yuan Chen 007; Laura Clarke; Guy Coates; Tony Cox 001; James A. Cuff; Val Curwen; Tim Cutts; et al. (Nucleic Acids Res., 2004)

WormBase: a multi-species resource for nematode biology and genomics. - Todd W. Harris; Nansheng Chen; Fiona Cunningham; Marcela K. Tello-Ruiz; Igor Antoshechkin; Carol Bastiani; Tamberlyn Bieri; Darin Blasiar; Keith Bradnam; Juancarlos Chan; Chao-Kung Chen; Wen J. Chen; et al. (Nucleic Acids Res., 2004)

WormBase: a comprehensive data resource for Caenorhabditis biology and genomics. - Nansheng Chen; Todd W. Harris; Igor Antoshechkin; Carol Bastiani; Tamberlyn Bieri; Darin Blasiar; Keith Bradnam; Payan Canaran; Juancarlos Chan; Chao-Kung Chen; Wen J. Chen; Fiona Cunningham; et al. (Nucleic Acids Res., 2005)

Ensembl 2005. - Tim J. P. Hubbard; D. Andrews; Mario Cáccamo; Graham Cameron; Yuan Chen 007; Michele E. Clamp; Laura Clarke; Guy Coates; Tony Cox 001; Fiona Cunningham; Val Curwen; Tim Cutts; et al. (Nucleic Acids Res., 2005)

InterPro, progress and status in 2005. - Nicola J. Mulder; Rolf Apweiler; Teresa K. Attwood; Amos Bairoch; Alex Bateman; David Binns; Paul Bradley; Peer Bork; Phillip Bucher; Lorenzo Cerutti; Richard R. Copley; Emmanuel Courcelle; et al. (Nucleic Acids Res., 2005)

Ensembl 2006. - Ewan Birney; T. Daniel Andrews; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Tony Cox 001; Fiona Cunningham; Val Curwen; Tim Cutts; Thomas A. Down; Richard Durbin; et al. (Nucleic Acids Res., 2006)

Pfam: clans, web tools and services. - Robert D. Finn; Jaina Mistry; Benjamin Schuster-Böckler; Sam Griffiths-Jones; Volker Hollich; Timo Lassmann; Simon Moxon; Mhairi Marshall; Ajay Khanna; Richard Durbin; Sean R. Eddy; Erik L. L. Sonnhammer; et al. (Nucleic Acids Res., 2006)

TreeFam: a curated database of phylogenetic trees of animal gene families. - Heng Li 002; Avril Coghlan; Jue Ruan; Lachlan James M. Coin; Jean-Karim Hériché; Lara Osmotherly; Ruiqiang Li; Tao Liu; Zhang Zhang 002; Lars Bolund; Gane Ka-Shu Wong; Wei-Mou Zheng; et al. (Nucleic Acids Res., 2006)

WormBase: better software, richer content. - Erich M. Schwarz; Igor Antoshechkin; Carol Bastiani; Tamberlyn Bieri; Darin Blasiar; Payan Canaran; Juancarlos Chan; Nansheng Chen; Wen J. Chen; Paul Davis 001; Tristan J. Fiedler; Lisa R. Girard; et al. (Nucleic Acids Res., 2006)

Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure. - Avril Coghlan; Richard Durbin (Bioinform., 2007)

WormBase: new content and better access. - Tamberlyn Bieri; Darin Blasiar; Philip Ozersky; Igor Antoshechkin; Carol Bastiani; Payan Canaran; Juancarlos Chan; Nansheng Chen; Wen J. Chen; Paul Davis 001; Tristan J. Fiedler; Lisa R. Girard; et al. (Nucleic Acids Res., 2007)

Ensembl 2007. - Tim J. P. Hubbard; Bronwen L. Aken; Kathryn Beal; Benoît Ballester; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Fiona Cunningham; Tim Cutts; Thomas A. Down; S. C. Dyer; et al. (Nucleic Acids Res., 2007)

Accounting for Non-genetic Factors Improves the Power of eQTL Studies. - Oliver Stegle; Anitha Kannan; Richard Durbin; John M. Winn (RECOMB, 2008)

Ensembl 2008. - Paul Flicek; Bronwen L. Aken; Kathryn Beal; Benoît Ballester; Mario Cáccamo; Yuan Chen 007; Laura Clarke; Guy Coates; Fiona Cunningham; Tim Cutts; Thomas A. Down; S. C. Dyer; et al. (Nucleic Acids Res., 2008)

WormBase 2007. - Anthony Rogers; Igor Antoshechkin; Tamberlyn Bieri; Darin Blasiar; Carol Bastiani; Payan Canaran; Juancarlos Chan; Wen J. Chen; Paul Davis 001; Jolene Fernandes; Tristan J. Fiedler; Michael Han 001; et al. (Nucleic Acids Res., 2008)

TreeFam: 2008 Update. - Jue Ruan; Heng Li 002; Zhongzhong Chen; Avril Coghlan; Lachlan James M. Coin; Yiran Guo; Jean-Karim Hériché; Yafeng Hu; Karsten Kristiansen; Ruiqiang Li; Tao Liu; Alan Moses; et al. (Nucleic Acids Res., 2008)

Fast and accurate short read alignment with Burrows-Wheeler transform. - Heng Li 002; Richard Durbin (Bioinform., 2009)

The Sequence Alignment/Map format and SAMtools. - Heng Li 002; Bob Handsaker; Alec Wysoker; Tim Fennell; Jue Ruan; Nils Homer; Gabor T. Marth; Gonçalo R. Abecasis; Richard Durbin (Bioinform., 2009)

Ensembl 2009. - Tim J. P. Hubbard; Bronwen L. Aken; Sarah C. Ayling; Benoît Ballester; Kathryn Beal; Eugene Bragin; Simon Brent; Yuan Chen 007; Peter Clapham; Laura Clarke; Guy Coates; Susan Fairley; et al. (Nucleic Acids Res., 2009)

Fast and accurate long-read alignment with Burrows-Wheeler transform. - Heng Li 002; Richard Durbin (Bioinform., 2010)

Efficient construction of an assembly string graph using the FM-index. - Jared T. Simpson; Richard Durbin (Bioinform., 2010)

Copy number variant detection in inbred strains from short read sequence data. - Jared T. Simpson; Rebecca E. McIntyre; David J. Adams; Richard Durbin (Bioinform., 2010)

Ensembl's 10th year. - Paul Flicek; Bronwen L. Aken; Benoît Ballester; Kathryn Beal; Eugene Bragin; Simon Brent; Yuan Chen 007; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Julio Fernandez-Banet; et al. (Nucleic Acids Res., 2010)

WormBase: a comprehensive resource for nematode research. - Todd W. Harris; Igor Antoshechkin; Tamberlyn Bieri; Darin Blasiar; Juancarlos Chan; Wen J. Chen; Norie De La Cruz; Paul Davis 001; Margaret J. Duesbury; Ruihua Fang; Jolene Fernandes; Michael Han 001; et al. (Nucleic Acids Res., 2010)

A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. - Oliver Stegle; Leopold Parts; Richard Durbin; John M. Winn (PLoS Comput. Biol., 2010)

The variant call format and VCFtools. - Petr Danecek; Adam Auton; Gonçalo R. Abecasis; Cornelis A. Albers; Eric Banks; Mark A. DePristo; Robert E. Handsaker; Gerton Lunter; Gabor T. Marth; Stephen T. Sherry; Gilean McVean; Richard Durbin (Bioinform., 2011)

Ensembl 2011. - Paul Flicek; M. Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Yuan Chen 007; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Leo Gordon; Maurice Hendrix; et al. (Nucleic Acids Res., 2011)

Ensembl 2012. - Paul Flicek; M. Ridwan Amode; Daniel Barrell; Kathryn Beal; Simon Brent; Denise Carvalho-Silva; Peter Clapham; Guy Coates; Susan Fairley; Stephen Fitzgerald; Laurent Gil; Leo Gordon; et al. (Nucleic Acids Res., 2012)

WormBase 2012: more genomes, more data, new website. - Karen Yook; Todd W. Harris; Tamberlyn Bieri; Abigail Cabunoc; Juancarlos Chan; Wen J. Chen; Paul Davis 001; Norie De La Cruz; Adrian Duong; Ruihua Fang; Uma Ganesan; Christian A. Grove; et al. (Nucleic Acids Res., 2012)

Efficient haplotype matching and storage using the positional Burrows-Wheeler transform (PBWT). - Richard Durbin (Bioinform., 2014)

BCFtools/RoH: a hidden Markov model approach for detecting autozygosity from next-generation sequencing data. - Vagheesh Narasimhan; Petr Danecek; Aylwyn Scally; Yali Xue; Chris Tyler-Smith; Richard Durbin (Bioinform., 2016)

A genomic history of Aboriginal Australia. - Anna-Sapfo Malaspinas; Michael C. Westaway; Craig Muller; Vitor C. Sousa; Oscar Lao; Isabel Alves; Anders Bergström; Georgios Athanasiadis; Jade Yu Cheng; Jacob E. Crawford; Tim H. Heupink; Enrico Macholdt; et al. (Nat., 2016)

A graph-based approach to diploid genome assembly. - Shilpa Garg; Mikko Rautiainen; Adam M. Novak; Erik Garrison; Richard Durbin; Tobias Marschall (Bioinform., 2018)

Crumble: reference free lossy compression of sequence quality values. - James K. Bonfield; Shane A. McCarthy; Richard Durbin (Bioinform., 2019)

Viral coinfection analysis using a MinHash toolkit. - Eric T. Dawson; Sarah Wagner; David Roberson; Meredith Yeager; Joseph Boland; Erik Garrison; Stephen J. Chanock; Mark Schiffman; Tina Raine-Bennett; Thomas Lorey; Phillip E. Castle; Lisa Mirabello; et al. (BMC Bioinform., 2019)

GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats. - Eric T. Dawson; Richard Durbin (J. Open Source Softw., 2019)

A haplotype-aware de novo assembly of related individuals using pedigree sequence graph. - Shilpa Garg; John Aach; Heng Li 002; Isaac Sebenius; Richard Durbin; George M. Church (Bioinform., 2020)

Identifying and removing haplotypic duplication in primary genome assemblies. - Dengfeng Guan; Shane A. McCarthy; Jonathan Wood; Kerstin Howe; Yadong Wang; Richard Durbin (Bioinform., 2020)

Haplotype-aware graph indexes. - Jouni Sirén; Erik Garrison; Adam M. Novak; Benedict Paten; Richard Durbin (Bioinform., 2020)

Efficient iterative Hi-C scaffolder based on N-best neighbors. - Dengfeng Guan; Shane A. McCarthy; Zemin Ning; Guohua Wang; Yadong Wang; Richard Durbin (BMC Bioinform., 2021)

Correction to: Efficient iterative Hi-C scaffolder based on N-best neighbors. - Dengfeng Guan; Shane A. McCarthy; Zemin Ning; Guohua Wang; Yadong Wang; Richard Durbin (BMC Bioinform., 2021)

YaHS: yet another Hi-C scaffolding tool. - Chenxi Zhou; Shane A. McCarthy; Richard Durbin (Bioinform., 2023)

MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. - Marcela Uliano-Silva; João Gabriel R. N. Ferreira; Ksenia Krasheninnikova; Mark L. Blaxter; Nova Mieszkowska; Neil Hall; Peter Holland; Richard Durbin; Thomas Richards; Paul J. Kersey; Peter Hollingsworth; Willie Wilson; et al. (BMC Bioinform., 2023)