Contraction Graphs for Representation and Analysis of RNA Secondary Structure. - Chris H. Q. Ding; Richard F. Meraz; Xiaofeng He; Stephen R. Holbrook (CSB, 2004)

Positive Sample Only Learning (PSOL) for Predicting RNA Genes in E. coli. - Richard F. Meraz; Xiaofeng He; Chris H. Q. Ding; Stephen R. Holbrook (CSB, 2004)

Classification of Non-Coding RNA Using Graph Representations of Secondary Structure. - Yan Karklin; Richard F. Meraz; Stephen R. Holbrook (Pacific Symposium on Biocomputing, 2005)

PSoL: a positive sample only learning algorithm for finding non-coding RNA genes. - Chunlin Wang; Chris H. Q. Ding; Richard F. Meraz; Stephen R. Holbrook (Bioinform., 2006)