The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. - Richard G. Côté; Philip Jones; Rolf Apweiler; Henning Hermjakob (BMC Bioinform., 2006)

PRIDE: a public repository of protein and peptide identifications for the proteomics community. - Philip Jones; Richard G. Côté; Lennart Martens; Antony F. Quinn; Chris F. Taylor; William Derache; Henning Hermjakob; Rolf Apweiler (Nucleic Acids Res., 2006)

An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases. - Sebastian Klie; Lennart Martens; Juan Antonio Vizcaíno; Richard G. Côté; Philip Jones; Rolf Apweiler; Alexander Hinneburg; Henning Hermjakob (German Conference on Bioinformatics, 2007)

Analysing latent topics in large-scale proteomics. - Sebastian Klie; Alexander Hinneburg; Lennart Martens; Juan Antonio Vizcaíno; Richard G. Côté; Philip Jones; Rolf Apweiler; Henning Hermjakob (LWA, 2007)

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. - Richard G. Côté; Philip Jones; Lennart Martens; Samuel Kerrien; Florian Reisinger; Quan Lin; Rasko Leinonen; Rolf Apweiler; Henning Hermjakob (BMC Bioinform., 2007)

Experience using web services for biological sequence analysis. - Heinz Stockinger; Teresa K. Attwood; Shahid Nadeem Chohan; Richard G. Côté; Philippe Cudré-Mauroux; Laurent Falquet; Pedro L. Fernandes; Robert D. Finn; Taavi Hupponen; Eija Korpelainen; Alberto Labarga; Aurélie Laugraud; et al. (Briefings Bioinform., 2008)

The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. - Richard G. Côté; Philip Jones; Lennart Martens; Rolf Apweiler; Henning Hermjakob (Nucleic Acids Res., 2008)

PRIDE: new developments and new datasets. - Philip Jones; Richard G. Côté; Sang Yun Cho; Sebastian Klie; Lennart Martens; Antony F. Quinn; David Thorneycroft; Henning Hermjakob (Nucleic Acids Res., 2008)

ISPIDER Central: an integrated database web-server for proteomics. - Jennifer A. Siepen; Khalid Belhajjame; Julian N. Selley; Suzanne M. Embury; Norman W. Paton; Carole A. Goble; Stephen G. Oliver; Robert Stevens 001; Lucas Zamboulis; Nigel J. Martin 001; Alexandra Poulovassilis; Philip Jones; et al. (Nucleic Acids Res., 2008)

OLS Dialog: An open-source front end to the Ontology Lookup Service. - Harald Barsnes; Richard G. Côté; Ingvar Eidhammer; Lennart Martens (BMC Bioinform., 2010)

The Ontology Lookup Service: bigger and better. - Richard G. Côté; Florian Reisinger; Lennart Martens; Harald Barsnes; Juan Antonio Vizcaíno; Henning Hermjakob (Nucleic Acids Res., 2010)

The Proteomics Identifications database: 2010 update. - Juan Antonio Vizcaíno; Richard G. Côté; Florian Reisinger; Harald Barsnes; Joseph M. Foster; Jonathan Rameseder; Henning Hermjakob; Lennart Martens (Nucleic Acids Res., 2010)

Critical amino acid residues in proteins: a BioMart integration of Reactome protein annotations with PRIDE mass spectrometry data and COSMIC somatic mutations. - Nelson Ndegwa; Richard G. Côté; David Ovelleiro; Peter D'Eustachio; Henning Hermjakob; Juan Antonio Vizcaíno; David Croft 001 (Database J. Biol. Databases Curation, 2011)

Improvements in the protein identifier cross-reference service. - Samuel P. Wein; Richard G. Côté; Marine Dumousseau; Florian Reisinger; Henning Hermjakob; Juan Antonio Vizcaíno (Nucleic Acids Res., 2012)

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013. - Juan Antonio Vizcaíno; Richard G. Côté; Attila Csordas; José A. Dianes; Antonio Fabregat; Joseph M. Foster; Johannes Griss; Emanuele Alpi; Melih Birim; Javier Contell; Gavin O'Kelly; Andreas Schoenegger; et al. (Nucleic Acids Res., 2013)