MADMAX - Management and analysis database for multiple omics experiments. - Ke Lin; Harrie Kools; Philip J. de Groot; Anand K. Gavai; Ram K. Basnet; Feng Cheng; Jian Wu; Xiaowu Wang; Arjen Lommen; Guido J. E. K. Hooiveld; Guusje Bonnema; Richard G. F. Visser; et al. (J. Integr. Bioinform., 2011)

Using Semantic Web Technology to Accelerate Plant Breeding. - Pierre-Yves Chibon; Benoît Carrères; Helena de Weerd; Richard G. F. Visser; Richard Finkers (SWAT4LS, 2012)

Marker2sequence, mine your QTL regions for candidate genes. - Pierre-Yves Chibon; Heiko Schoof; Richard G. F. Visser; Richard Finkers (Bioinform., 2012)

Integration of multi-omics data for prediction of phenotypic traits using random forest. - Animesh Acharjee; Bjorn Kloosterman; Richard G. F. Visser; Chris Maliepaard (BMC Bioinform., 2016)

Toward Better Data Sharing Methods for Genebanks. - Evangelia Papoutsoglou; Rajaram Kaliyaperumal; Theo J. L. van Hintum; Richard G. F. Visser; Ioannis N. Athanasiadis; Richard Finkers (S4BioDiv@ISWC, 2017)

polymapR - linkage analysis and genetic map construction from F1 populations of outcrossing polyploids. - Peter M. Bourke; Geert van Geest; Roeland E. Voorrips; Johannes Jansen; Twan Kranenburg; Arwa Shahin; Richard G. F. Visser; Paul Arens; Marinus J. M. Smulders; Chris Maliepaard (Bioinform., 2018)

QTLTableMiner++: semantic mining of QTL tables in scientific articles. - Gurnoor Singh; Arnold Kuzniar; Erik M. van Mulligen; Anand K. Gavai; Christian W. Bachem; Richard G. F. Visser; Richard Finkers (BMC Bioinform., 2018)

Haplotype assembly of autotetraploid potato using integer linear programing. - Enrico Siragusa; Niina Haiminen; Richard Finkers; Richard G. F. Visser; Laxmi Parida (Bioinform., 2019)

Detecting quantitative trait loci and exploring chromosomal pairing in autopolyploids using polyqtlR. - Peter M. Bourke; Roeland E. Voorrips; Christine A. Hackett; Geert van Geest; Johan H. Willemsen; Paul Arens; Marinus J. M. Smulders; Richard G. F. Visser; Chris Maliepaard (Bioinform., 2021)

Detection of Botrytis cinerea severity in rose petals using hyperspectral imaging for plant breeding applications. - Maikel Zerdoner; Suzan Gabriëls; Paul Arens; Richard G. F. Visser; Puneet Mishra (Comput. Electron. Agric., 2025)