A software approach to fault detection on programmable systolic arrays. - Richard Hughey; Daniel P. Lopresti (SPDP, 1990)

B-SYS: A 470-Processor Programmable Systolic Array. - Richard Hughey; Daniel P. Lopresti (ICPP (1), 1991)

Programming systolic arrays. - Richard Hughey (ASAP, 1992)

Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families. - Michael Brown; Richard Hughey; Anders Krogh; I. Saira Mian; Kimmen Sjölander; David Haussler (ISMB, 1993)

Concurrent Error Detection on Programmable Systolic Arrays. - Richard Hughey (IEEE Trans. Computers, 1993)

Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars. - Yasubumi Sakakibara; Michael Brown; Richard Hughey; I. Saira Mian; Kimmen Sjölander; Rebecca C. Underwood; David Haussler (CPM, 1994)

RNA Modeling Using Gibbs Sampling and Stochastic Context Free Grammars. - Leslie Grate; Mark Herbster; Richard Hughey; David Haussler; I. Saira Mian; Harry Noller (ISMB, 1994)

Parallel Sequence Comparison and Alignment. - Richard Hughey (ASAP, 1995)

Parallel Sequence Alignment in Limited Space. - J. Alicia Grice; Richard Hughey; Don Speck (ISMB, 1995)

Kestrel: A Programmable Array for Sequence Analysis. - Jeffrey D. Hirschberg; Richard Hughey; Kevin Karplus; Don Speck (ASAP, 1996)

Parallel hardware for sequence comparison and alignment. - Richard Hughey (Comput. Appl. Biosci., 1996)

Hidden Markov models for sequence analysis: extension and analysis of the basic method. - Richard Hughey; Anders Krogh (Comput. Appl. Biosci., 1996)

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology. - Kimmen Sjölander; Kevin Karplus; Michael Brown; Richard Hughey; Anders Krogh; I. Saira Mian; David Haussler (Comput. Appl. Biosci., 1996)

Multiprecision Division on an 8-bit Processor. - Eric Rice; Richard Hughey (IEEE Symposium on Computer Arithmetic, 1997)

Kestrel: Design of an 8-bit SIMD Parallel Processor. - David M. Dahle; Jeffrey D. Hirschberg; Kevin Karplus; Hansjörg Keller; Eric Rice; Don Speck; Douglas H. Williams; Richard Hughey (ARVLSI, 1997)

Scoring hidden Markov models. - Christian Barrett; Richard Hughey; Kevin Karplus (Comput. Appl. Biosci., 1997)

Reduced space sequence alignment. - J. Alicia Grice; Richard Hughey; Don Speck (Comput. Appl. Biosci., 1997)

Statistic Modeling, Phylogenetic Analysis and Strjucture Prediction of a Protein Splicing Domain Common to Infeins and Hedgehog Proteins. - J. Z. Dalgaard; M. J. Moser; Richard Hughey; I. Saira Mian (J. Comput. Biol., 1997)

Weighting hidden Markov models for maximum discrimination. - Rachel Karchin; Richard Hughey (Bioinform., 1998)

Hidden Markov models for detecting remote protein homologies. - Kevin Karplus; Christian Barrett; Richard Hughey (Bioinform., 1998)

Reduced space hidden Markov model training. - C. Tarnas; Richard Hughey (Bioinform., 1998)

Kestrel: A Programmable Array for Sequence Analysis. - Jeffrey D. Hirschberg; David M. Dahle; Kevin Karplus; Don Speck; Richard Hughey (J. VLSI Signal Process., 1998)

The UCSC Kestrel General Purpose Parallel Processor. - David M. Dahle; Leslie Grate; Eric Rice; Richard Hughey (PDPTA, 1999)

Explicit SIMD Programming for Asynchronous Applications. - Andrea Di Blas; Richard Hughey (ASAP, 2000)

Optimizing reduced-space sequence analysis. - Raymond Wheeler; Richard Hughey (Bioinform., 2000)

High Performance Computing for Computational Biology - Session Introduction. - Thomas E. Ferrin; Bruce A. Foster; Richard Hughey (Pacific Symposium on Biocomputing, 2001)

Sequence Analysis With the Kestrel SIMD Parallel Processor. - Leslie Grate; Mark Diekhans; David M. Dahle; Richard Hughey (Pacific Symposium on Biocomputing, 2001)

Molecular Fingerprinting on the SIMD Parallel Processor Kestrel. - Eric Rice; Richard Hughey (Pacific Symposium on Biocomputing, 2001)

Predicting reliable regions in protein sequence alignments. - Melissa S. Cline; Richard Hughey; Kevin Karplus (Bioinform., 2002)

Energy function-based approaches to graph coloring. - Andrea Di Blas; Arun Jagota; Richard Hughey (IEEE Trans. Neural Networks, 2002)

A New Iterative Structure for Hardware Division: The Parallel Paths Algorithm. - Eric Rice; Richard Hughey (IEEE Symposium on Computer Arithmetic, 2003)

A Range-Compaction Heuristic for Graph Coloring. - Andrea Di Blas; Arun Jagota; Richard Hughey (J. Heuristics, 2003)

Calibrating E-values for hidden Markov models using reverse-sequence null models. - Kevin Karplus; Rachel Karchin; George Shackelford; Richard Hughey (Bioinform., 2005)

Optimizing neural networks on SIMD parallel computers. - Andrea Di Blas; Arun Jagota; Richard Hughey (Parallel Comput., 2005)

The UCSC Kestrel Parallel Processor. - Andrea Di Blas; David M. Dahle; Mark Diekhans; Leslie Grate; Jeffrey D. Hirschberg; Kevin Karplus; Hansjörg Keller; Mark Kendrick; Francisco J. Mesa-Martinez; David Pease; Eric Rice; Angela Schultz; et al. (IEEE Trans. Parallel Distributed Syst., 2005)

The UCSC Kestrel Application-Unspecific Processor. - Richard Hughey; Andrea Di Blas (ASAP, 2006)

Finding the Next Computational Model: Experience with the UCSC Kestrel. - Richard Hughey; Andrea Di Blas (J. Signal Process. Syst., 2008)

FPGA-based fine-grain parallel computing (abstract only). - Andrew W. Hill; Andrea Di Blas; Richard Hughey (FPGA, 2011)

VAR-TX: A variability-aware SRAM model for predicting the optimum architecture to achieve minimum access-time for yield enhancement in nano-scaled CMOS. - Jeren Samandari-Rad; Matthew R. Guthaus; Richard Hughey (ISQED, 2012)

Confronting the Variability Issues Affecting the Performance of Next-Generation SRAM Design to Optimize and Predict the Speed and Yield. - Jeren Samandari-Rad; Matthew R. Guthaus; Richard Hughey (IEEE Access, 2014)

Power/Energy Minimization Techniques for Variability-Aware High-Performance 16-nm 6T-SRAM. - Jeren Samandari-Rad; Richard Hughey (IEEE Access, 2016)