RNAmod: an integrated system for the annotation of mRNA modifications. - Qi Liu; Richard I. Gregory (Nucleic Acids Res., 2019)

RiboToolkit: an integrated platform for analysis and annotation of ribosome profiling data to decode mRNA translation at codon resolution. - Qi Liu; Tanya Shvarts; Piotr Sliz; Richard I. Gregory (Nucleic Acids Res., 2020)

Ribo-uORF: a comprehensive data resource of upstream open reading frames (uORFs) based on ribosome profiling. - Qi Liu; Xin Peng; Mengyuan Shen; Qian Qian; Junlian Xing; Chen Li 056; Richard I. Gregory (Nucleic Acids Res., 2023)