A multiple time step scheme for multiresolved models of Macromolecules. - Nicodemo Di Pasquale; Richard J. Gowers; Paola Carbone (J. Comput. Chem., 2014)

datreant: persistent, Pythonic trees for heterogeneous data. - David L. Dotson; Sean L. Seyler; Max Linke; Richard J. Gowers; Oliver Beckstein (SciPy, 2016)

MDAnalysis: A Python Package for the Rapid Analysis of Molecular Dynamics Simulations. - Richard J. Gowers; Max Linke; Jonathan Barnoud; Tyler J. E. Reddy; Manuel N. Melo; Sean L. Seyler; Jan J. Domanski; David L. Dotson; Sébastien Buchoux; Ian M. Kenney; Oliver Beckstein (SciPy, 2016)

PMDA - Parallel Molecular Dynamics Analysis. - Shujie Fan; Max Linke; Ioannis Paraskevakos; Richard J. Gowers; Michael Gecht; Oliver Beckstein (SciPy, 2019)

A different approach to dual-scale models. - Richard J. Gowers; Paola Carbone; Nicodemo Di Pasquale (J. Comput. Phys., 2020)

Konnektor: A Framework for Using Graph Theory to Plan Networks for Free Energy Calculations. - Benjamin Ries; Richard J. Gowers; Hannah M. Baumann; David W. H. Swenson; Michael M. Henry; James R. B. Eastwood; Irfan Alibay; David L. Mobley (J. Chem. Inf. Model., 2024)