JVirGel: calculation of virtual two-dimensional protein gels. - Karsten Hiller; Max Schobert; Claudia Hundertmark; Dieter Jahn; Richard Münch (Nucleic Acids Res., 2003)

TRANSFAC®: transcriptional regulation, from patterns to profiles. - V. Matys; Ellen Fricke; R. Geffers; Ellen Gößling; Martin Haubrock; Reinhard Hehl; Klaus Hornischer; Dagmar Karas; Alexander E. Kel; Olga V. Kel-Margoulis; Dorothee-U. Kloos; Sigrid Land; et al. (Nucleic Acids Res., 2003)

PRODORIC: prokaryotic database of gene regulation. - Richard Münch; Karsten Hiller; Heiko Barg; Dana Heldt; Simone Linz; Edgar Wingender; Dieter Jahn (Nucleic Acids Res., 2003)

PrediSi: prediction of signal peptides and their cleavage positions. - Karsten Hiller; Andreas Grote; Maurice Scheer; Richard Münch; Dieter Jahn (Nucleic Acids Res., 2004)

Analysing layout information: searching PDF documents for pictures. - Brigitte Mathiak; Andreas Kupfer; Richard Münch; Claudia Täubner; Silke Eckstein (LWA, 2005)

Virtual Footprint and PRODORIC: an integrative framework for regulon prediction in prokaryotes. - Richard Münch; Karsten Hiller; Andreas Grote; Maurice Scheer; Johannes Klein; Max Schobert; Dieter Jahn (Bioinform., 2005)

JCat: a novel tool to adapt codon usage of a target gene to its potential expression host. - Andreas Grote; Karsten Hiller; Maurice Scheer; Richard Münch; Bernd Nörtemann; Dietmar C. Hempel; Dieter Jahn (Nucleic Acids Res., 2005)

VBASE2, an integrative V gene database. - Ida Retter; Hans-Helmar Althaus; Richard Münch; Werner Müller (Nucleic Acids Res., 2005)

PRODORIC: a software suite for the analysis of gene regulation in prokaryotes. - Richard Münch (2005)

Improving Literature Preselection by Searching for Images. - Brigitte Mathiak; Andreas Kupfer; Richard Münch; Claudia Täubner; Silke Eckstein (KDLL, 2006)

MetaQuant: a tool for the automatic quantification of GC/MS-based metabolome data. - Boyke Bunk; Martin Kucklick; Rochus Jonas; Richard Münch; Max Schobert; Dieter Jahn; Karsten Hiller (Bioinform., 2006)

JVirGel 2.0: computational prediction of proteomes separated via two-dimensional gel electrophoresis under consideration of membrane and secreted proteins. - Karsten Hiller; Andreas Grote; Matthias Maneck; Richard Münch; Dieter Jahn (Bioinform., 2006)

JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information. - Maurice Scheer; Frank Klawonn; Richard Münch; Andreas Grote; Karsten Hiller; Claudia Choi; Ina Koch; Max Schobert; Elisabeth Härtig; Ulrich Klages; Dieter Jahn (Nucleic Acids Res., 2006)

A Likelihood Ratio Test for Differential Metabolic Profiles in Multiple Intensity Measurements. - Frank Klawonn; Claudia Choi; Beatrice Benkert; Bernhard Thielen; Richard Münch; Max Schobert; Dietmar Schomburg; Dieter Jahn (KES (2), 2007)

Analysis of metabolome data by a maximum likelihood approach. - Claudia Choi; Claudia Hundertmark; Bernhard Thielen; Beatrice Benkert; Richard Münch; Max Schobert; Dietmar Schomburg; Dieter Jahn; Frank Klawonn (BMC Syst. Biol., 2007)

Combination of a data warehouse concept with web services for the establishment of the Pseudomonas systems biology database SYSTOMONAS. - Claudia Choi; Richard Münch; Boyke Bunk; Jens Barthelmes; Christian Ebeling; Dietmar Schomburg; Max Schobert; Dieter Jahn (J. Integr. Bioinform., 2007)

SYSTOMONAS - an integrated database for systems biology analysis of Pseudomonas. - Claudia Choi; Richard Münch; Stefan Leupold; Johannes Klein; Inga Siegel; Bernhard Thielen; Beatrice Benkert; Martin Kucklick; Max Schobert; Jens Barthelmes; Christian Ebeling; Isam Haddad; et al. (Nucleic Acids Res., 2007)

ROSY - A Flexible and Universal Database and Bioinformatics Tool Platform for Roseobacter Related Species. - Claudia Pommerenke; Inga Gabriel; Boyke Bunk; Richard Münch; Isam Haddad; Petra Tielen; Irene Wagner-Döbler; Dieter Jahn (Silico Biol., 2008)

ProdoNet: identification and visualization of prokaryotic gene regulatory and metabolic networks. - Johannes Klein; Stefan Leupold; Richard Münch; Claudia Pommerenke; Thorsten Johl; Uwe Kärst; Lothar Jänsch; Dieter Jahn; Ida Retter (Nucleic Acids Res., 2008)

PRODORIC (release 2009): a database and tool platform for the analysis of gene regulation in prokaryotes. - Andreas Grote; Johannes Klein; Ida Retter; Isam Haddad; Susanne Behling; Boyke Bunk; Ilona Biegler; Svitlana Yarmolinetz; Dieter Jahn; Richard Münch (Nucleic Acids Res., 2009)

Strepto-DB, a database for comparative genomics of group A (GAS) and B (GBS) streptococci, implemented with the novel database platform 'Open Genome Resource' (OGeR). - Johannes Klein; Richard Münch; Ilona Biegler; Isam Haddad; Ida Retter; Dieter Jahn (Nucleic Acids Res., 2009)

GeneReporter - sequence-based document retrieval and annotation. - Annekathrin Bartsch; Boyke Bunk; Isam Haddad; Johannes Klein; Richard Münch; Thorsten Johl; Uwe Kärst; Lothar Jänsch; Dieter Jahn; Ida Retter (Bioinform., 2011)

TLM-Tracker: software for cell segmentation, tracking and lineage analysis in time-lapse microscopy movies. - Johannes Klein; Stefan Leupold; Ilona Biegler; Rebekka Biedendieck; Richard Münch; Dieter Jahn (Bioinform., 2012)

InFiRe - a novel computational method for the identification of insertion sites in transposon mutagenized bacterial genomes. - Olga Shevchuk; Louisa Roselius; Gabriele Günther; Johannes Klein; Dieter Jahn; Michael Steinert; Richard Münch (Bioinform., 2012)

Software LS-MIDA for efficient mass isotopomer distribution analysis in metabolic modelling. - Zeeshan Ahmed 001; Saman Zeeshan; Claudia Huber; Michael Hensel; Dietmar Schomburg; Richard Münch; Wolfgang Eisenreich; Thomas Dandekar (BMC Bioinform., 2013)

'Isotopo' a database application for facile analysis and management of mass isotopomer data. - Zeeshan Ahmed 001; Saman Zeeshan; Claudia Huber; Michael Hensel; Dietmar Schomburg; Richard Münch; Eva Eylert; Wolfgang Eisenreich; Thomas Dandekar (Database J. Biol. Databases Curation, 2014)

Evolutionary model for the unequal segregation of high copy plasmids. - Karin Münch; Richard Münch; Rebekka Biedendieck; Dieter Jahn; Johannes Müller (PLoS Comput. Biol., 2019)