Speeding disease gene discovery by sequence based candidate prioritization. - Euan A. Adie; Richard R. Adams; Kathryn L. Evans; David J. Porteous; Ben S. Pickard (BMC Bioinform., 2005)

SUSPECTS: enabling fast and effective prioritization of positional candidates. - Euan A. Adie; Richard R. Adams; Kathryn L. Evans; David J. Porteous; Ben S. Pickard (Bioinform., 2006)

Reproducible computational biology experiments with SED-ML - The Simulation Experiment Description Markup Language. - Dagmar Waltemath; Richard R. Adams; Frank T. Bergmann; Michael Hucka; Fedor A. Kolpakov; Andrew K. Miller; Ion I. Moraru; David P. Nickerson; Sven Sahle; Jacky L. Snoep; Nicolas Le Novère (BMC Syst. Biol., 2011)

Minimum Information About a Simulation Experiment (MIASE). - Dagmar Waltemath; Richard R. Adams; Daniel A. Beard; Frank T. Bergmann; Upinder S. Bhalla; Randall Britten; Vijayalakshmi Chelliah; Mike T. Cooling; Jonathan Cooper; Edmund J. Crampin; Alan Garny; Stefan Hoops; et al. (PLoS Comput. Biol., 2011)

SED-ED, a workflow editor for computational biology experiments written in SED-ML. - Richard R. Adams (Bioinform., 2012)

SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology. - Richard R. Adams; Allan B. Clark; Azusa Yamaguchi; Neil Hanlon; Nikos Tsorman; Shakir Ali; Galina Lebedeva; Alexey N. Goltsov; Anatoly A. Sorokin; Ozgur E. Akman; Carl Troein; Andrew J. Millar; et al. (Bioinform., 2013)

The systems biology simulation core algorithm. - Roland Keller; Alexander Dörr; Akito Tabira; Akira Funahashi; Michael J. Ziller; Richard R. Adams; Nicolas Rodriguez 001; Nicolas Le Novère; Noriko Hiroi; Hannes Planatscher; Andreas Zell; Andreas Dräger (BMC Syst. Biol., 2013)

COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project. - Frank T. Bergmann; Richard R. Adams; Stuart L. Moodie; Jonathan Cooper; Mihai Glont; Martin Golebiewski; Michael Hucka; Camille Laibe; Andrew K. Miller; David P. Nickerson; Brett G. Olivier; Nicolas Rodriguez 001; et al. (BMC Bioinform., 2014)