Ecological Modeling from Time-Series Inference: Insight into Dynamics and Stability of Intestinal Microbiota. - Richard R. Stein; Vanni Bucci; Nora C. Toussaint; Charlie G. Buffie; Gunnar Rätsch; Eric G. Pamer; Chris Sander; João B. Xavier (PLoS Comput. Biol., 2013)

Inferring Pairwise Interactions from Biological Data Using Maximum-Entropy Probability Models. - Richard R. Stein; Debora S. Marks; Chris Sander (PLoS Comput. Biol., 2015)

Perturbation biology links temporal protein changes to drug responses in a melanoma cell line. - Elin Nyman; Richard R. Stein; Xiaohong Jing; Weiqing Wang; Benjamin Marks; Ioannis K. Zervantonakis; Anil Korkut; Nicholas Paul Gauthier; Chris Sander (PLoS Comput. Biol., 2020)