Extension and Robustness of Transitivity Clustering for Protein-Protein Interaction Network Analysis. - Tobias Wittkop; Sven Rahmann; Richard Röttger; Sebastian Böcker; Jan Baumbach (Internet Math., 2011)

Online Transitivity Clustering of Biological Data with Missing Values. - Richard Röttger; Christoph Kreutzer; Thuy Duong Vu; Tobias Wittkop; Jan Baumbach (GCB, 2012)

CoryneRegNet 6.0 - Updated database content, new analysis methods and novel features focusing on community demands. - Josch Pauling; Richard Röttger; Andreas Tauch; Vasco Ariston de Carvalho Azevedo; Jan Baumbach (Nucleic Acids Res., 2012)

How Little Do We Actually Know? On the Size of Gene Regulatory Networks. - Richard Röttger; Ulrich Rückert 002; Jan Taubert; Jan Baumbach (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Density parameter estimation for finding clusters of homologous proteins - tracing actinobacterial pathogenicity lifestyles. - Richard Röttger; Prabhav Kalaghatgi; Peng Sun 008; Siomar de Castro Soares; Vasco Ariston de Carvalho Azevedo; Tobias Wittkop; Jan Baumbach (Bioinform., 2013)

On the limits of computational functional genomics for bacterial lifestyle prediction. - Eudes Barbosa; Richard Röttger; Anne-Christin Hauschild; Vasco Ariston de Carvalho Azevedo; Jan Baumbach (GCB, 2014)

BacillusRegNet: A transcriptional regulation database and analysis platform for Bacillus species. - Goksel Misirli; Jennifer Hallinan; Richard Röttger; Jan Baumbach; Anil Wipat (J. Integr. Bioinform., 2014)

Active transitivity clustering of large-scale biomedical datasets. - Richard Röttger (2014)

In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks. - Edson Luiz Folador; Paulo Vinícius Sanches Daltro de Carvalho; Wanderson Marques Silva; Rafaela Salgado Ferreira; Artur Silva; M. Michael Gromiha; Preetam Ghosh; Debmalya Barh; Vasco Ariston de Carvalho Azevedo; Richard Röttger (BMC Syst. Biol., 2016)

Jllumina - A comprehensive Java-based API for statistical Illumina Infinium HumanMethylation450 and MethylationEPIC data processing. - Diogo Almeida; Ida Skov; Jesper Lund; Afsaneh Mohammadnejad; Artur Silva; Fabio Vandin; Qihua Tan; Jan Baumbach; Richard Röttger (J. Integr. Bioinform., 2016)

Clustering of Biological Datasets in the Era of Big Data. - Richard Röttger (J. Integr. Bioinform., 2016)

On the power and limits of sequence similarity based clustering of proteins into families. - Christian Wiwie; Richard Röttger (PSB, 2017)

Efficient detection of differentially methylated regions using DiMmeR. - Diogo Almeida; Ida Skov; Artur Silva; Fabio Vandin; Qihua Tan; Richard Röttger; Jan Baumbach (Bioinform., 2017)

LifeStyle-Specific-Islands (LiSSI): Integrated Bioinformatics Platform for Genomic Island Analysis. - Eudes Barbosa; Richard Röttger; Anne-Christin Hauschild; Siomar de Castro Soares; Sebastian Böcker; Vasco Ariston de Carvalho Azevedo; Jan Baumbach (J. Integr. Bioinform., 2017)

Privacy-preserving Artificial Intelligence Techniques in Biomedicine. - Reihaneh Torkzadehmahani; Reza Nasirigerdeh; David B. Blumenthal; Tim Kacprowski; Markus List; Julian O. Matschinske; Julian Späth; Nina Kerstin Wenke; Béla Bihari; Tobias Frisch; Anne Hartebrodt; Anne-Christin Hauschild; et al. (CoRR, 2020)

Federated Principal Component Analysis for Genome-Wide Association Studies. - Anne Hartebrodt; Reza Nasirigerdeh; David B. Blumenthal; Richard Röttger (ICDM, 2021)

The FeatureCloud AI Store for Federated Learning in Biomedicine and Beyond. - Julian O. Matschinske; Julian Späth; Reza Nasirigerdeh; Reihaneh Torkzadehmahani; Anne Hartebrodt; Balázs Orbán; Sándor Fejér; Olga I. Zolotareva; Mohammad Bakhtiari; Béla Bihari; Marcus D. Bloice; Nina C. Donner; et al. (CoRR, 2021)

Enabling single-cell trajectory network enrichment. - Alexander G. B. Grønning; Mhaned Oubounyt; Kristiyan Kanev; Jesper Lund; Tim Kacprowski; Dietmar Zehn; Richard Röttger; Jan Baumbach (Nat. Comput. Sci., 2021)

DRHDR: A Dual branch Residual Network for Multi-Bracket High Dynamic Range Imaging. - Juan Marín-Vega; Michael Sloth; Peter Schneider-Kamp; Richard Röttger (CVPR Workshops, 2022)

NTIRE 2022 Challenge on High Dynamic Range Imaging: Methods and Results. - Eduardo Pérez-Pellitero; Sibi Catley-Chandar; Richard Shaw; Ales Leonardis; Radu Timofte; Zexin Zhang; Cen Liu; Yunbo Peng; Yue Lin 002; Gaocheng Yu; Jin Zhang; Zhe Ma; et al. (CVPR Workshops, 2022)

Reversed Image Signal Processing and RAW Reconstruction. AIM 2022 Challenge Report. - Marcos V. Conde; Radu Timofte; Yibin Huang; Jingyang Peng; Chang Chen; Cheng Li 009; Eduardo Pérez-Pellitero; Fenglong Song; Furui Bai; Shuai Liu 009; Chaoyu Feng; Xiaotao Wang; et al. (ECCV Workshops (3), 2022)

MS2AI: automated repurposing of public peptide LC-MS data for machine learning applications. - Tobias Greisager Rehfeldt; Konrad Krawczyk; Mathias Bøgebjerg; Veit Schwämmle; Richard Röttger (Bioinform., 2022)

A Comparison of Federated Aggregation Strategies and Architectures for Next-word Prediction. - Yana Sakhnovych; Richard Röttger; Rudolf Mayer (IEEE Big Data, 2023)

Human-in-the-Loop Integration with Domain-Knowledge Graphs for Explainable Federated Deep Learning. - Andreas Holzinger; Anna Saranti; Anne-Christin Hauschild; Jacqueline Michelle Beinecke; Dominik Heider; Richard Röttger; Heimo Müller; Jan Baumbach; Bastian Pfeifer (CD-MAKE, 2023)

The Tower of Babel in Explainable Artificial Intelligence (XAI). - David Schneeberger; Richard Röttger; Federico Cabitza; Andrea Campagner; Markus Plass; Heimo Müller; Andreas Holzinger (CD-MAKE, 2023)

Privacy of Federated QR Decomposition Using Additive Secure Multiparty Computation. - Anne Hartebrodt; Richard Röttger (IEEE Trans. Inf. Forensics Secur., 2023)

Improving Clinical Documentation of Rare Neuromuscular Diseases: Development of a Standardised Information Model. - Miriam Hübner; Elisabeth Nyoungui; Elisabetta Gazzero; Lina Hassoun; Jana Zschüntzsch; Dagmar Krefting; Josef Schepers; Richard Röttger (MIE, 2024)

Post-hoc vs ante-hoc explanations: xAI design guidelines for data scientists. - Carl Orge Retzlaff; Alessa Angerschmid; Anna Saranti; David Schneeberger; Richard Röttger; Heimo Müller; Andreas Holzinger (Cogn. Syst. Res., 2024)

Privacy-Preserving Multi-Center Differential Protein Abundance Analysis with FedProt. - Yuliya Burankova; Miriam Abele; Mohammad Bakhtiari; Christine von Törne; Teresa Barth; Lisa Schweizer; Pieter Giesbertz; Johannes R. Schmidt; Stefan Kalkhof; Janina Müller-Deile; Peter A. van Veelen; Yassene Mohammed; et al. (CoRR, 2024)

Federated singular value decomposition for high-dimensional data. - Anne Hartebrodt; Richard Röttger; David B. Blumenthal (Data Min. Knowl. Discov., 2024)