Conformational searching methods for small molecules. II. Genetic algorithm approach. - Richard S. Judson; Edward P. Jaeger; Adi M. Treasurywala; Melissa L. Peterson (J. Comput. Chem., 1993)

Analysis of the genetic algorithm method of molecular conformation determination. - D. B. McGarrah; Richard S. Judson (J. Comput. Chem., 1993)

Docking Flexible Molecules: A Case Study of Three Proteins. - Richard S. Judson; Y. T. Tan; E. Mori; C. Melius; Edward P. Jaeger; Adi M. Treasurywala; Alan M. Mathiowetz (J. Comput. Chem., 1995)

A comparison of a direct search method and a genetic algorithm for conformational searching. - Juan C. Meza; Richard S. Judson; T. R. Faulkner; Adi M. Treasurywala (J. Comput. Chem., 1996)

A comparison of machine learning algorithms for chemical toxicity classification using a simulated multi-scale data model. - Richard S. Judson; Fathi Elloumi; R. Woodrow Setzer; Zhen Li; Imran Shah (BMC Bioinform., 2008)

Genetic Algorithms. - Richard S. Judson (Encyclopedia of Optimization, 2009)

Genetic Algorithms for Protein Structure Prediction. - Richard S. Judson (Encyclopedia of Optimization, 2009)

ToxPi GUI: an interactive visualization tool for transparent integration of data from diverse sources of evidence. - David M. Reif; Myroslav Sypa; Eric F. Lock; Fred A. Wright; Ander Wilson; Tommy Cathey; Richard S. Judson; Ivan Rusyn (Bioinform., 2013)

Binary Classification of a Large Collection of Environmental Chemicals from Estrogen Receptor Assays by Quantitative Structure-Activity Relationship and Machine Learning Methods. - Qingda Zang; Daniel M. Rotroff; Richard S. Judson (J. Chem. Inf. Model., 2013)

tcpl: the ToxCast pipeline for high-throughput screening data. - Dayne L. Filer; Parth Kothiya; R. Woodrow Setzer; Richard S. Judson; Matthew T. Martin (Bioinform., 2017)

The CompTox Chemistry Dashboard: a community data resource for environmental chemistry. - Antony J. Williams; Christopher M. Grulke; Jeff Edwards; Andrew D. McEachran; Kamel Mansouri; Nancy C. Baker; Grace Patlewicz; Imran Shah; John Wambaugh; Richard S. Judson; Ann M. Richard (J. Cheminformatics, 2017)

In Silico Prediction of Physicochemical Properties of Environmental Chemicals Using Molecular Fingerprints and Machine Learning. - Qingda Zang; Kamel Mansouri; Antony J. Williams; Richard S. Judson; David G. Allen; Warren M. Casey; Nicole C. Kleinstreuer (J. Chem. Inf. Model., 2017)

Predictive Structure-Based Toxicology Approaches To Assess the Androgenic Potential of Chemicals. - Daniela Trisciuzzi; Domenico Alberga; Kamel Mansouri; Richard S. Judson; Ettore Novellino; Giuseppe Felice Mangiatordi; Orazio Nicolotti (J. Chem. Inf. Model., 2017)

Exploring non-linear distance metrics in the structure-activity space: QSAR models for human estrogen receptor. - Ilya A. Balabin; Richard S. Judson (J. Cheminformatics, 2018)

OPERA models for predicting physicochemical properties and environmental fate endpoints. - Kamel Mansouri; Christopher M. Grulke; Richard S. Judson; Antony J. Williams (J. Cheminformatics, 2018)

Predicting molecular initiating events using chemical target annotations and gene expression. - Joseph L. Bundy; Richard S. Judson; Antony J. Williams; Christopher M. Grulke; Imran Shah; Logan J. Everett (BioData Min., 2022)

tcplfit2: an R-language general purpose concentration-response modeling package. - Thomas Sheffield; Jason Brown; Sarah Davidson; Katie Paul Friedman; Richard S. Judson (Bioinform., 2022)

Free and open-source QSAR-ready workflow for automated standardization of chemical structures in support of QSAR modeling. - Kamel Mansouri; José Teófilo Moreira-Filho; Charles N. Lowe; Nathaniel Charest; Todd M. Martin; Valery Tkachenko; Richard S. Judson; Mike Conway; Nicole C. Kleinstreuer; Antony J. Williams (J. Cheminformatics, 2024)