MAPS: a microarray project system for gene expression experiment information and data validation. - Pierre R. Bushel; Hisham Hamadeh; Lee Bennett; Stella Sieber; Karla Martin; Emile F. Nuwaysir; Kate Johnson; Kelli Reynolds; Richard S. Paules; Cynthia A. Afshari (Bioinform., 2001)

Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models. - Russell D. Wolfinger; Greg Gibson; Elizabeth D. Wolfinger; Lee Bennett; Hisham Hamadeh; Pierre R. Bushel; Cynthia A. Afshari; Richard S. Paules (J. Comput. Biol., 2001)

Computational selection of distinct class- and subclass-specific gene expression signatures. - Pierre R. Bushel; Hisham Hamadeh; Lee Bennett; James Green; Alan Ableson; Stephen Misener; Cynthia A. Afshari; Richard S. Paules (J. Biomed. Informatics, 2002)

Systematic Variation Normalization in Microarray Data to Get Gene Expression Comparison Unbiased. - Jeff W. Chou; Richard S. Paules; Pierre R. Bushel (J. Bioinform. Comput. Biol., 2005)

Extracting gene expression patterns and identifying co-expressed genes from microarray data reveals biologically responsive processes. - Jeff W. Chou; Tong Zhou; William K. Kaufmann; Richard S. Paules; Pierre R. Bushel (BMC Bioinform., 2007)

CEBS - Chemical Effects in Biological Systems: a public data repository integrating study design and toxicity data with microarray and proteomics data. - Michael D. Waters; Stanley Stasiewicz; B. Alex Merrick; Kenneth B. Tomer; Pierre R. Bushel; Richard S. Paules; Nancy Stegman; Gerald Nehls; Kenneth J. Yost III; C. Harris Johnson; Scott F. Gustafson; Sandhya Xirasagar; et al. (Nucleic Acids Res., 2008)

BMDExpress 2: enhanced transcriptomic dose-response analysis workflow. - Jason R. Phillips; Daniel L. Svoboda; Arpit Tandon; Shyam Patel; Alex Sedykh; Deepak Mav; Byron Kuo; Carole L. Yauk; Longlong Yang; Russell S. Thomas; Jeff S. Gift; J. Allen Davis; et al. (Bioinform., 2019)