On the Optimal Solutions to AND/OR Series-Parallel Graphs. - Richard Simon; Richard C. T. Lee (J. ACM, 1971)

GEST: a gene expression search tool based on a novel Bayesian similarity metric. - Lawrence Hunter; Ronald C. Taylor; Sonia M. Leach; Richard Simon (ISMB (Supplement of Bioinformatics), 2001)

Comparison of microarray designs for class comparison and class discovery. - Kevin Dobbin; Richard Simon (Bioinform., 2002)

A bioinformatics tool to select sequences for microarray studies of mouse models of oncogenesis. - Mary E. Edgerton; Ronald C. Taylor; John I. Powell; Lawrence Hunter; Richard Simon; Edison T. Liu (Bioinform., 2002)

Statistical Design of Reverse Dye Microarrays. - Kevin Dobbin; Joanna H. Shih; Richard Simon (Bioinform., 2003)

A random variance model for detection of differential gene expression in small microarray experiments. - George W. Wright; Richard Simon (Bioinform., 2003)

Evaluation of normalization methods for microarray data. - Taesung Park; Sung-Gon Yi; Sung-Hyun Kang; Seung Yeoun Lee; Yong-Sung Lee; Richard Simon (BMC Bioinform., 2003)

Supervised analysis when the number of candidate features (p) greatly exceeds the number of cases (n). - Richard Simon (SIGKDD Explor., 2003)

Iterative class discovery and feature selection using Minimal Spanning Trees. - Sudhir Varma; Richard Simon (BMC Bioinform., 2004)

Genomewide Conserved Epitope Profiles of HIV-1 Predicted by Biophysical Properties of MHC Binding Peptides. - Myong-Hee Sung; Richard Simon (J. Comput. Biol., 2004)

Comment on 'Evaluation of the gene-specific dye bias in cDNA microarray experiments'. - Kevin Dobbin; Joanna H. Shih; Richard Simon (Bioinform., 2005)

Prediction error estimation: a comparison of resampling methods. - Annette M. Molinaro; Richard Simon; Ruth M. Pfeiffer (Bioinform., 2005)

Bias in error estimation when using cross-validation for model selection. - Sudhir Varma; Richard Simon (BMC Bioinform., 2006)

Identifying cancer driver genes in tumor genome sequencing studies. - Ahrim Youn; Richard Simon (Bioinform., 2011)

Construct and Compare Gene Coexpression Networks with DAPfinder and DAPview. - Jeff Skinner; Yuri Kotliarov; Sudhir Varma; Karina L. Mine; Anatoly Yambartsev; Richard Simon; Yentram Huyen; Andrey Morgun (BMC Bioinform., 2011)

Microarray-based Cancer Prediction Using Single Genes. - Xiaosheng Wang; Richard Simon (BMC Bioinform., 2011)

Estimating the order of mutations during tumorigenesis from tumor genome sequencing data. - Ahrim Youn; Richard Simon (Bioinform., 2012)

Using passenger mutations to estimate the timing of driver mutations and identify mutator alterations. - Ahrim Youn; Richard Simon (BMC Bioinform., 2013)

Underground stope optimization with network flow method. - Xiaoyu Bai; Denis Marcotte; Richard Simon (Comput. Geosci., 2013)

Using single cell sequencing data to model the evolutionary history of a tumor. - Kyung In Kim; Richard Simon (BMC Bioinform., 2014)