A perturbation-based method for calculating explicit likelihood of evolutionary co-variance in multiple sequence alignments. - John P. Dekker; Anthony Fodor; Richard W. Aldrich; Gary Yellen (Bioinform., 2004)

Ancestral reconstruction of protein interaction networks. - Benjamin J. Liebeskind; Richard W. Aldrich; Edward M. Marcotte (PLoS Comput. Biol., 2019)