DSAP: deep-sequencing small RNA analysis pipeline. - Po-Jung Huang; Yi-Chung Liu; Chi-Ching Lee; Wei-Chen Lin; Richie Ruei-Chi Gan; Ping-Chiang Lyu; Petrus Tang (Nucleic Acids Res., 2010)

CMPD: cancer mutant proteome database. - Po-Jung Huang; Chi-Ching Lee; Bertrand Chin-Ming Tan; Yuan-Ming Yeh; Lichieh Julie Chu; Ting-Wen Chen; Kai-Ping Chang; Cheng-Yang Lee; Richie Ruei-Chi Gan; Hsuan Liu; Petrus Tang (Nucleic Acids Res., 2015)

PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms. - Richie Ruei-Chi Gan; Ting-Wen Chen; Timothy H. Wu; Po-Jung Huang; Chi-Ching Lee; Yuan-Ming Yeh; Cheng-Hsun Chiu; Hsien-Da Huang; Petrus Tang (BMC Bioinform., 2016)