Module networks revisited: computational assessment and prioritization of model predictions. - Anagha Joshi; Riet De Smet; Kathleen Marchal; Yves Van de Peer; Tom Michoel (Bioinform., 2009)

Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks. - Tom Michoel; Riet De Smet; Anagha Joshi; Yves Van de Peer; Kathleen Marchal (BMC Syst. Biol., 2009)

An ensemble method for querying gene expression compendia with experimental lists. - Riet De Smet; Kathleen Marchal (BIBM, 2010)

An ensemble biclustering approach for querying gene expression compendia with experimental lists. - Riet De Smet; Kathleen Marchal (Bioinform., 2011)

Query-based biclustering of gene expression data using Probabilistic Relational Models. - Hui Zhao; Lore Cloots; Tim Van den Bulcke; Yan Wu; Riet De Smet; Valerie Storms; Pieter Meysman; Kristof Engelen; Kathleen Marchal (BMC Bioinform., 2011)

Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coli. - Pieter Meysman; Thanh Hai Dang; Kris Laukens; Riet De Smet; Yan Wu; Kathleen Marchal; Kristof Engelen (Nucleic Acids Res., 2011)