Computational Strategies for Analyzing Data in Gene Expression Microarray Experiments. - Tero Aittokallio; Markus Kurki; Olli Nevalainen; Tuomas Nikula; Anne West; Riitta Lahesmaa (J. Bioinform. Comput. Biol., 2003)

Quality classification of tandem mass spectrometry data. - Jussi Salmi; Robert Moulder; Jan-Jonas Filén; Olli Nevalainen; Tuula A. Nyman; Riitta Lahesmaa; Tero Aittokallio (Bioinform., 2006)

Inference of Gene Coexpression Networks by Integrative Analysis across Microarray Experiments. - Laura Elo; Riitta Lahesmaa; Tero Aittokallio (J. Integr. Bioinform., 2006)

Systematic construction of gene coexpression networks with applications to human T helper cell differentiation process. - Laura Elo; Henna Järvenpää; Matej Oresic; Riitta Lahesmaa; Tero Aittokallio (Bioinform., 2007)

Reproducibility-Optimized Test Statistic for Ranking Genes in Microarray Studies. - Laura Elo; Sanna Filen; Riitta Lahesmaa; Tero Aittokallio (IEEE ACM Trans. Comput. Biol. Bioinform., 2008)

Integrative genomics and transcriptomics analysis of human embryonic and induced pluripotent stem cells. - Kirsti Laurila; Reija Autio; Lingjia Kong; Elisa Närvä; Samer Hussein; Timo Otonkoski; Riitta Lahesmaa; Harri Lähdesmäki (BioData Min., 2014)

Methods for time series analysis of RNA-seq data with application to human Th17 cell differentiation. - Tarmo Äijö; Vincent Butty; Zhi Jane Chen; Verna Salo; Subhash Tripathi; Christopher B. Burge; Riitta Lahesmaa; Harri Lähdesmäki (Bioinform., 2014)

Analyzing Th17 cell differentiation dynamics using a novel integrative modeling framework for time-course RNA sequencing data. - Jukka Intosalmi; Helena Ahlfors; Sini Rautio; Henrik Mannerström; Zhi Jane Chen; Riitta Lahesmaa; Brigitta Stockinger; Harri Lähdesmäki (BMC Syst. Biol., 2015)

snpEnrichR: analyzing co-localization of SNPs and their proxies in genomic regions. - Kari Nousiainen; Kartiek Kanduri; Isis Ricaño-Ponce; Cisca Wijmenga; Riitta Lahesmaa; Vinod Kumar 004; Harri Lähdesmäki (Bioinform., 2018)