CNAmet: an R package for integrating copy number, methylation and expression data. - Riku Louhimo; Sampsa Hautaniemi (Bioinform., 2011)

Identification of genetic markers with synergistic survival effect in cancer. - Riku Louhimo; Marko Laakso; Tuomas Heikkinen; Susanna Laitinen; Pekka Manninen; Vladimir Rogojin; Minna Miettinen; Carl Blomqvist; Jianjun Liu; Heli Nevanlinna; Sampsa Hautaniemi (BMC Syst. Biol., 2013)

Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data. - Amjad Alkodsi; Riku Louhimo; Sampsa Hautaniemi (Briefings Bioinform., 2015)

Data integration to prioritize drugs using genomics and curated data. - Riku Louhimo; Marko Laakso; Denis Belitskin; Juha Klefström; Rainer Lehtonen; Sampsa Hautaniemi (BioData Min., 2016)

Anduril 2: upgraded large-scale data integration framework. - Alejandra Cervera; Ville Rantanen; Kristian Ovaska; Marko Laakso; Javier Nuñez-Fontarnau; Amjad Alkodsi; Julia Casado; Chiara Facciotto; Antti Häkkinen; Riku Louhimo; Sirkku Karinen; Kaiyang Zhang; et al. (Bioinform., 2019)