Accurate self-correction of errors in long reads using de Bruijn graphs. - Leena Salmela; Riku Walve; Eric Rivals; Esko Ukkonen (Bioinform., 2017)

Kermit: Guided Long Read Assembly using Coloured Overlap Graphs. - Riku Walve; Pasi Rastas; Leena Salmela (WABI, 2018)

Kermit: linkage map guided long read assembly. - Riku Walve; Pasi Rastas; Leena Salmela (Algorithms Mol. Biol., 2019)

HGGA: hierarchical guided genome assembler. - Riku Walve; Leena Salmela (BMC Bioinform., 2022)

Space-Efficient Indexing of Spaced Seeds for Accurate Overlap Computation of Raw Optical Mapping Data. - Riku Walve; Simon J. Puglisi; Leena Salmela (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Improving Contiguity and Accuracy in Genome Assembly. - Riku Walve (2023)