CHORAL: a differential geometry approach to the prediction of the cores of protein structures. - Rinaldo W. Montalvão; Richard E. Smith; Simon C. Lovell; Tom L. Blundell (Bioinform., 2005)

Andante: reducing side-chain rotamer search space during comparative modeling using environment-specific substitution probabilities. - Richard E. Smith; Simon C. Lovell; David F. Burke; Rinaldo W. Montalvão; Tom L. Blundell (Bioinform., 2007)

Polyphony: superposition independent methods for ensemble-based drug discovery. - William R. Pitt; Rinaldo W. Montalvão; Tom L. Blundell (BMC Bioinform., 2014)