VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis. - MacIntosh Cornwell; Mahesh Vangala; Len Taing; Zachary Herbert; Johannes Köster; Bo Li; Hanfei Sun; Taiwen Li; Jian Zhang; Xintao Qiu; Matthew Pun; Rinath Jeselsohn; et al. (BMC Bioinform., 2018)

CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq Analysis. - Xintao Qiu; Avery S. Feit; Ariel Feiglin; Yingtian Xie; Nikolas Kesten; Len Taing; Joseph Perkins; Shengqing Gu; Yihao Li; Paloma Cejas; Ningxuan Zhou; Rinath Jeselsohn; et al. (Genom. Proteom. Bioinform., 2021)