Analysis of base-pairing potentials between 16S rRNA and 5' UTR for translation initiation in various prokaryotes. - Y. Osada; Rintaro Saito; Masaru Tomita (Bioinform., 1999)

Construction of reliable protein-protein interaction networks with a new interaction generality measure. - Rintaro Saito; Harukazu Suzuki; Yoshihide Hayashizaki (Bioinform., 2003)

Computational Analysis of Stop Codon Readthrough in D.melanogaster. - Misaki Sato; Hitomi Umeki; Rintaro Saito; Akio Kanai; Masaru Tomita (Bioinform., 2003)

Inferring rules of Escherichia coli translational efficiency using an artificial neural network. - Koya Mori; Rintaro Saito; Shinichi Kikuchi; Masaru Tomita (Biosyst., 2007)

Variation in the Correlation of G + C Composition with Synonymous Codon Usage Bias among Bacteria. - Haruo Suzuki; Rintaro Saito; Masaru Tomita (EURASIP J. Bioinform. Syst. Biol., 2007)

eXpanda: An Integrated Platform for Network Analysis and Visualization. - Yoshiteru Negishi; Hiroyuki Nakamura; Nozomu Yachie; Rintaro Saito; Masaru Tomita (Silico Biol., 2007)

Measure of synonymous codon usage diversity among genes in bacteria. - Haruo Suzuki; Rintaro Saito; Masaru Tomita (BMC Bioinform., 2009)

Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data. - Haruna Imamura; Nozomu Yachie; Rintaro Saito; Yasushi Ishihama; Masaru Tomita (BMC Bioinform., 2010)

Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions. - Yosuke Ozawa; Rintaro Saito; Shigeo Fujimori; Hisashi Kashima; Masamichi Ishizaka; Hiroshi Yanagawa; Etsuko Miyamoto-Sato; Masaru Tomita (BMC Bioinform., 2010)

Integrative Features of the Yeast Phosphoproteome and Protein-Protein Interaction Map. - Nozomu Yachie; Rintaro Saito; Naoyuki Sugiyama; Masaru Tomita; Yasushi Ishihama (PLoS Comput. Biol., 2011)

iDMET: network-based approach for integrating differential analysis of cancer metabolomics. - Rira Matsuta; Hiroyuki Yamamoto; Masaru Tomita; Rintaro Saito (BMC Bioinform., 2022)