Hausdorff Metric Based Vector Quantization of Binary Images. - Aiyesha Ma; Rishi Mukhopadhyay; Ishwar K. Sethi (IKE, 2003)

Pathfinder networks for content based image retrieval based on automated shape feature discovery. - Rishi Mukhopadhyay; Aiyesha Ma; Ishwar K. Sethi (ISMSE, 2004)

Evidence for Functional Protein Fragment Homology in Viral Genome Types. - John Rose; Rishi Mukhopadhyay (BIOCOMP, 2006)

Does Nucleotide Compositional Bias Explain Amino Acid Usage in Viral Genomes?. - Rishi Mukhopadhyay; John Rose (BIOCOMP, 2008)

Protein Fold Family Recognition From Unassigned Residual Dipolar Coupling Data. - Rishi Mukhopadhyay; Paul Shealy; Homayoun Valafar (BIOCOMP, 2008)

Automated Assignment of Backbone Resonances Using Residual Dipolar Couplings Acquired from a Protein with Known Structure. - Paul Shealy; Rishi Mukhopadhyay; Stephen Smith; Homayoun Valafar (BIOCOMP, 2008)

Using Residual Dipolar Couplings from Two Alignment Media to Detect Structural Homology. - Ryan Yandle; Rishi Mukhopadhyay; Homayoun Valafar (BIOCOMP, 2009)

Dynafold: a Dynamic Programming Approach to protein Backbone Structure determination from Minimal Sets of residual Dipolar couplings. - Rishi Mukhopadhyay; Stephanie Jimenez Irausquin; Chris Schmidt; Homayoun Valafar (J. Bioinform. Comput. Biol., 2014)

Structure Calculation and Reconstruction of Discrete State Dynamics from Residual Dipolar Couplings using REDCRAFT. - Casey A. Cole; Rishi Mukhopadhyay; Hanin Omar; Mirko Hennig; Homayoun Valafar (CoRR, 2021)