Cluster Quality based Non-Reductional (CQNR) oversampling technique and effector protein predictor based on 3D structure (EPP3D) of proteins. - Rishika Sen; Somnath Tagore; Rajat K. De (Comput. Biol. Medicine, 2019)

PyPredT6: A python-based prediction tool for identification of Type VI effector proteins. - Rishika Sen; Losiana Nayak; Rajat K. De (J. Bioinform. Comput. Biol., 2019)

ASAPP: Architectural Similarity-Based Automated Pathway Prediction System and Its Application in Host-Pathogen Interactions. - Rishika Sen; Somnath Tagore; Rajat K. De (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Knowledge Distillation of Domain-adapted LLMs for Question-Answering in Telecom. - Rishika Sen; Sujoy Roychowdhury; Sumit Soman; H. G. Ranjani; Srikhetra Mohanty (CoRR, 2025)