User Interface for Turkish Word Network KeNet. - Riza Özçelik; Gökçe Uludogan; Selen Parlar; Özge Bakay; Özlem Ergelen; Olcay Taner Yildiz (SIU, 2019)

Data and Representation for Turkish Natural Language Inference. - Emrah Budur; Riza Özçelik; Tunga Gungor; Christopher Potts (EMNLP (1), 2020)

Vapur: A Search Engine to Find Related Protein - Compound Pairs in COVID-19 Literature. - Abdullatif Köksal; Hilal Dönmez; Riza Özçelik; Elif Ozkirimli 001; Arzucan Özgür (NLP4COVID@EMNLP, 2020)

Use of Machine Translation to Obtain Labeled Datasets for Resource-Constrained Languages. - Emrah Budur; Riza Özçelik; Tunga Güngör; Christopher Potts (CoRR, 2020)

DebiasedDTA: Model Debiasing to Boost Drug-Target Affinity Prediction. - Riza Özçelik; Alperen Bag; Berk Atil; Arzucan Özgür; Elif Özkirimli 001 (CoRR, 2021)

Structure-based drug discovery with deep learning. - Riza Özçelik; Derek van Tilborg; José Jiménez-Luna; Francesca Grisoni (CoRR, 2022)

A Computational Software for Training Robust Drug-Target Affinity Prediction Models: pydebiaseddta. - Melih Barsbey; Riza Özçelik; Alperen Bag; Berk Atil; Arzucan Özgür; Elif Ozkirimli 001 (J. Comput. Biol., 2023)

A Framework for Improving the Generalizability of Drug-Target Affinity Prediction Models. - Riza Özçelik; Alperen Bag; Berk Atil; Melih Barsbey; Arzucan Özgür; Elif Ozkirimli 001 (J. Comput. Biol., 2023)

Predicting Metabolic Reactions with a Molecular Transformer for Drug Design Optimization. - Silvia Multari; Riza Özçelik; Angelica Mazzolari; Marco Salvatore Nobile; Francesca Grisoni (CIBCB, 2024)

A Hitchhiker's Guide to Deep Chemical Language Processing for Bioactivity Prediction. - Riza Özçelik; Francesca Grisoni (CoRR, 2024)

Building efficient and effective OpenQA systems for low-resource languages. - Emrah Budur; Riza Özçelik; Dilara Soylu; Omar Khattab; Tunga Güngör; Christopher Potts (Knowl. Based Syst., 2024)

Generative Deep Learning for de Novo Drug Design─A Chemical Space Odyssey. - Riza Özçelik; Helena Brinkmann; Emanuele Criscuolo; Francesca Grisoni (J. Chem. Inf. Model., 2025)

The Jungle of Generative Drug Discovery: Traps, Treasures, and Ways Out. - Riza Özçelik; Francesca Grisoni (CoRR, 2025)

Look the Other Way: Designing 'Positive' Molecules with Negative Data via Task Arithmetic. - Riza Özçelik; Sarah de Ruiter; Francesca Grisoni (CoRR, 2025)