Automatic Outlier Detection for Genome Assembly Quality Assessment. - Taghrid Samak; Rob Egan; Brian Bushnell; Daniel K. Gunter; Alex Copeland; Zhong Wang 003 (e-Science, 2013)

ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies. - Scott C. Clark; Rob Egan; Peter I. Frazier; Zhong Wang 003 (Bioinform., 2013)

HipMer: an extreme-scale de novo genome assembler. - Evangelos Georganas; Aydin Buluç; Jarrod Chapman; Steven A. Hofmeyr; Chaitanya Aluru; Rob Egan; Leonid Oliker; Daniel Rokhsar; Katherine A. Yelick (SC, 2015)

Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems. - Marquita Ellis; Evangelos Georganas; Rob Egan; Steven A. Hofmeyr; Aydin Buluç; Brandon Cook 001; Leonid Oliker; Katherine A. Yelick (Euro-Par, 2017)

MerBench: PGAS Benchmarks for High Performance Genome Assembly. - Evangelos Georganas; Marquita Ellis; Rob Egan; Steven A. Hofmeyr; Aydin Buluç; Brandon Cook 001; Leonid Oliker; Katherine A. Yelick (PAW@SC, 2017)

Extreme-Scale De Novo Genome Assembly. - Evangelos Georganas; Steven A. Hofmeyr; Rob Egan; Aydin Buluç; Leonid Oliker; Daniel Rokhsar; Katherine A. Yelick (CoRR, 2017)

Extreme scale de novo metagenome assembly. - Evangelos Georganas; Rob Egan; Steven A. Hofmeyr; Eugene Goltsman; Bill Arndt; Andrew Tritt; Aydin Buluç; Leonid Oliker; Katherine A. Yelick (SC, 2018)

De novo Nanopore read quality improvement using deep learning. - Nathan LaPierre; Rob Egan; Wei Wang 010; Zhong Wang 003 (BMC Bioinform., 2019)

The Parallelism Motifs of Genomic Data Analysis. - Katherine A. Yelick; Aydin Buluç; Muaaz G. Awan; Ariful Azad; Benjamin Brock; Rob Egan; Saliya Ekanayake; Marquita Ellis; Evangelos Georganas; Giulia Guidi; Steven A. Hofmeyr; Oguz Selvitopi; et al. (CoRR, 2020)

Accelerating large scale de novo metagenome assembly using GPUs. - Muaaz Gul Awan; Steven A. Hofmeyr; Rob Egan; Nan Ding 006; Aydin Buluç; Jack Deslippe; Leonid Oliker; Katherine A. Yelick (SC, 2021)

Persistent memory as an effective alternative to random access memory in metagenome assembly. - Jingchao Sun; Zhining Qiu; Rob Egan; Harrison Ho; Yue Li; Zhong Wang 003 (BMC Bioinform., 2022)

Designing Efficient SIMD Kernels for High Performance Sequence Alignment. - Doru-Thom Popovici; Muaaz Gul Awan; Giulia Guidi; Rob Egan; Steven A. Hofmeyr; Leonid Oliker; Katherine A. Yelick (IPDPS Workshops, 2023)

Exabiome: Advancing Microbial Science through Exascale Computing. - Steven A. Hofmeyr; Aydin Buluç; Robert Riley 002; Rob Egan; Oguz Selvitopi; Leonid Oliker; Katherine A. Yelick; Migun Shakya; Brett Youtsey; Ariful Azad (Comput. Sci. Eng., 2024)