Estimating Costs and Benefits of CTL Escape Mutations in SIV/HIV Infection. - Vitaly V. Ganusov; Rob J. De Boer (PLoS Comput. Biol., 2006)

Dynamics of Immune Escape during HIV/SIV Infection. - Christian L. Althaus; Rob J. De Boer (PLoS Comput. Biol., 2008)

Current Estimates for HIV-1 Production Imply Rapid Viral Clearance in Lymphoid Tissues. - Rob J. De Boer; Ruy M. Ribeiro; Alan S. Perelson (PLoS Comput. Biol., 2010)

Explicit Kinetic Heterogeneity: Mathematical Models for Interpretation of Deuterium Labeling of Heterogeneous Cell Populations. - Vitaly V. Ganusov; José A. M. Borghans; Rob J. De Boer (PLoS Comput. Biol., 2010)

Which of Our Modeling Predictions Are Robust? - Rob J. De Boer (PLoS Comput. Biol., 2012)

Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire. - Jorg J. A. Calis; Rob J. De Boer; Can Kesmir (PLoS Comput. Biol., 2012)

Chemotactic Migration of T Cells towards Dendritic Cells Promotes the Detection of Rare Antigens. - Renske M. A. Vroomans; Athanasius F. M. Marée; Rob J. De Boer; Joost B. Beltman (PLoS Comput. Biol., 2012)

Analytical results on the Beauchemin model of lymphocyte migration. - Johannes Textor; Mathieu Sinn; Rob J. De Boer (BMC Bioinform., 2013)

A new model to simulate and analyze proliferating cell populations in BrdU labeling experiments. - Daniella Schittler; Frank Allgöwer; Rob J. De Boer (BMC Syst. Biol., 2013)

Virus Encoded MHC-Like Decoys Diversify the Inhibitory KIR Repertoire. - Paola Carrillo-Bustamante; Can Kesmir; Rob J. De Boer (PLoS Comput. Biol., 2013)

Immuno-epidemiological Modeling of HIV-1 Predicts High Heritability of the Set-Point Virus Load, while Selection for CTL Escape Dominates Virulence Evolution. - Christiaan H. van Dorp; Michiel van Boven; Rob J. De Boer (PLoS Comput. Biol., 2014)

Random Migration and Signal Integration Promote Rapid and Robust T Cell Recruitment. - Johannes Textor; Sarah E. Henrickson; Judith N. Mandl; Ulrich H. von Andrian; Jürgen Westermann; Rob J. De Boer; Joost B. Beltman (PLoS Comput. Biol., 2014)

Reconciling Estimates of Cell Proliferation from Stable Isotope Labeling Experiments. - Raya Ahmed; Liset Westera; Julia Drylewicz; Marjet Elemans; Yan Zhang; Elizabeth Kelly; Rajko Reljic; Kiki Tesselaar; Rob J. De Boer; Derek C. Macallan; José A. M. Borghans; Becca Asquith (PLoS Comput. Biol., 2015)

Crawling and Gliding: A Computational Model for Shape-Driven Cell Migration. - Ioana Niculescu; Johannes Textor; Rob J. De Boer (PLoS Comput. Biol., 2015)

RTCR: a pipeline for complete and accurate recovery of T cell repertoires from high throughput sequencing data. - Bram Gerritsen; Aridaman Pandit; Arno C. Andeweg; Rob J. De Boer (Bioinform., 2016)

Toxin production spontaneously becomes regulated by local cell density in evolving bacterial populations. - Hilje M. Doekes; Rob J. De Boer; Rutger Hermsen (PLoS Comput. Biol., 2019)

Testing structural identifiability by a simple scaling method. - Mario Castro; Rob J. De Boer (PLoS Comput. Biol., 2020)

Challenges in cybersecurity: Lessons from biological defense systems. - Edward C. Schrom II; Ann Kinzig; Stephanie Forrest; Andrea L. Graham; Simon A. Levin; Carl T. Bergstrom; Carlos Castillo-Chavez; James P. Collins 002; Rob J. De Boer; Adam Doupé; Roya Ensafi; Stuart I. Feldman; et al. (CoRR, 2021)

The limitations, dangers, and benefits of simple methods for testing identifiability. - Mario Castro; Rob J. De Boer (PLoS Comput. Biol., 2021)