Comparative analysis of the Arabidopsis and rice Expressed Sequence Tag (EST) sets. - Rob M. Ewing; Olivier Poirot; Jean-Michel Claverie (Silico Biol., 1999)

Visualization of expression clusters using Sammon's non-linear mapping. - Rob M. Ewing; J. Michael Cherry (Bioinform., 2001)

A High-Throughput Bioinformatics Platform for Mass Spectrometry-Based Proteomics. - Thodoros Topaloglou; Moyez Dharsee; Rob M. Ewing; Yury V. Bukhman (DILS, 2007)

Design and Analysis of Quantitative Differential Proteomics Investigations Using LC-MS Technology. - Yury V. Bukhman; Moyez Dharsee; Rob M. Ewing; Peter Chu 004; Thodoros Topaloglou; Thierry Le Bihan; Theo Goh; Henry Duewel; Ian I. Stewart; Jacek R. Wisniewski; Nancy F. Ng (J. Bioinform. Comput. Biol., 2008)

Systematic discovery of condition specific Wnt signaling subnetworks. - Sudipto Saha; Rob M. Ewing (BIBM Workshops, 2011)

DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization. - Sinan Erten; Gürkan Bebek; Rob M. Ewing; Mehmet Koyutürk (BioData Min., 2011)

ROCS: A reproducibility index and confidence score for interaction proteomics. - Jean-Eudes J. Dazard; Sudipto Saha; Rob M. Ewing (BMC Bioinform., 2012)

A semantic proteomics dashboard (SemPoD) for data management in translational research. - Catherine P. Jayapandian; Meng Zhao; Rob M. Ewing; Guo-Qiang Zhang 001; Satya Sanket Sahoo (BMC Syst. Biol., 2012)

Network-based approaches for extending the Wnt signalling pathway and identifying context-specific sub-networks. - Sudipto Saha; Theodore Roman; Alex Galante; Mehmet Koyutürk; Rob M. Ewing (Int. J. Comput. Biol. Drug Des., 2012)

A Method of Integrating Spatial Proteomics and Protein-Protein Interaction Network Data. - Steven Squires; Rob M. Ewing; Adam Prügel-Bennett; Mahesan Niranjan (ICONIP (5), 2017)

TransformerGO: predicting protein-protein interactions by modelling the attention between sets of gene ontology terms. - Ioan Ieremie; Rob M. Ewing; Mahesan Niranjan (Bioinform., 2022)

Protein language models meet reduced amino acid alphabets. - Ioan Ieremie; Rob M. Ewing; Mahesan Niranjan (Bioinform., 2024)