Accurate peptide fragmentation predictions allow data driven approaches to replace and improve upon proteomics search engine scoring functions. - Ana S. C. Silva; Robbin Bouwmeester; Lennart Martens; Sven Degroeve (Bioinform., 2019)

Updated MS²PIP web server supports cutting-edge proteomics applications. - Arthur Declercq; Robbin Bouwmeester; Cristina Chiva; Eduard Sabidó; Aurélie Hirschler; Christine Carapito; Lennart Martens; Sven Degroeve; Ralf Gabriels (Nucleic Acids Res., 2023)

FAVA: high-quality functional association networks inferred from scRNA-seq and proteomics data. - Mikaela Koutrouli; Katerina C. Nastou; Pau Piera Líndez; Robbin Bouwmeester; Simon Rasmussen; Lennart Martens; Lars Juhl Jensen (Bioinform., 2024)