CASA: a server for the critical assessment of protein sequence alignment accuracy. - Robel Y. Kahsay; Guoli Wang 005; Nataraj Dongre; Guang R. Gao; Roland L. Dunbrack Jr. (Bioinform., 2002)

An Improved Hidden Markov Model for Transmembrane Topology Prediction. - Robel Y. Kahsay; Li Liao; Guang R. Gao (ICTAI, 2004)

Discriminating transmembrane proteins from signal peptides using SVM-Fisher approach. - Li Liao; Robel Y. Kahsay; Guang R. Gao (ICMLA, 2005)

An improved hidden Markov model for transmembrane protein detection and topology prediction and its applications to complete genomes. - Robel Y. Kahsay; Guang R. Gao; Li Liao (Bioinform., 2005)

Quasi-consensus-based comparison of profile hidden Markov models for protein sequences. - Robel Y. Kahsay; Guoli Wang 005; Guang R. Gao; Li Liao; Roland L. Dunbrack Jr. (Bioinform., 2005)

Identification of key differentially expressed MicroRNAs in cancer patients through pan-cancer analysis. - Yu Hu 015; Hayley Dingerdissen; Samir Gupta; Robel Y. Kahsay; K. Vijay-Shanker; Quan Wan; Cheng Yan; Raja Mazumder (Comput. Biol. Medicine, 2018)

BioMuta and BioXpress: mutation and expression knowledgebases for cancer biomarker discovery. - Hayley Dingerdissen; John Torcivia-Rodriguez; Yu Hu 015; Ting-Chia Chang; Raja Mazumder; Robel Y. Kahsay (Nucleic Acids Res., 2018)

OncoMX: an Integrated Cancer Mutation and Expression Knowledgebase for Biomarker Evaluation and Discovery. - Amanda Bell; Raja Mazumder; Daniel J. Crichton; Vijay K. Shanker; Frédéric B. Bastian; Hayley Dingerdissen; Samir Gupta; Evan Holmes; Robel Y. Kahsay; Heather L. Kincaid; A. S. M. Ashique Mahmood; Marc Robinson-Rechavi; et al. (AMIA, 2019)

GlyGen data model and processing workflow. - Robel Y. Kahsay; Jeet Vora; Rahi Navelkar; Reza Mousavi; Brian C. Fochtman; Xavier Holmes; Nagarajan Pattabiraman; René Ranzinger; Rupali Mahadik; Tatiana Williamson; Sujeet Kulkarni; Gaurav Agarwal; et al. (Bioinform., 2020)

COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model. - Nikhita Gogate; Daniel Lyman; Amanda Bell; Edmund Cauley; Keith A. Crandall; Ashia Joseph; Robel Y. Kahsay; Darren A. Natale; Lynn M. Schriml; Sabyasach Sen; Raja Mazumder (Briefings Bioinform., 2021)

Bioinformatics tools developed to support BioCompute Objects. - Janisha A. Patel; Dennis A. Dean; Charles Hadley King; Nan Xiao 002; Soner Koc; Ekaterina Minina; Anton Golikov; Phillip Brooks; Robel Y. Kahsay; Rahi Navelkar; Manisha Ray; Dave Roberson; et al. (Database J. Biol. Databases Curation, 2021)