SNPchip: R classes and methods for SNP array data. - Robert B. Scharpf; Jason C. Ting; Jonathan Pevsner; Ingo Ruczinski (Bioinform., 2007)

Pre-processing Agilent microarray data. - Marianna Zahurak; Giovanni Parmigiani; Wayne Yu; Robert B. Scharpf; David Berman; Edward M. Schaeffer; Shabana Shabbeer; Leslie Cope (BMC Bioinform., 2007)

Performance assessment of copy number microarray platforms using a spike-in experiment. - Eitan Halper-Stromberg; Laurence Frelin; Ingo Ruczinski; Robert B. Scharpf; Chunfa Jie; Benilton S. Carvalho; Haiping Hao; Kurt N. Hetrick; Anne Jedlicka; Amanda Dziedzic; Kim Doheny; Alan F. Scott; et al. (Bioinform., 2011)

Fast detection of de novo copy number variants from SNP arrays for case-parent trios. - Robert B. Scharpf; Terri H. Beaty; Holger Schwender; Samuel G. Younkin; Alan F. Scott; Ingo Ruczinski (BMC Bioinform., 2012)

Detection of de novo copy number deletions from targeted sequencing of trios. - Jack M. Fu; Elizabeth J. Leslie; Alan F. Scott; Jeffrey C. Murray; Mary L. Marazita; Terri H. Beaty; Robert B. Scharpf; Ingo Ruczinski (Bioinform., 2019)

Detection of rare disease variants in extended pedigrees using RVS. - Thomas Sherman; Jack M. Fu; Robert B. Scharpf; Alexandre Bureau; Ingo Ruczinski (Bioinform., 2019)

Detecting and quantifying antibody reactivity in PhIP-Seq data with BEER. - Athena Chen; Kai Kammers; H. Benjamin Larman; Robert B. Scharpf; Ingo Ruczinski (Bioinform., 2022)

Estimation of cancer cell fractions and clone trees from multi-region sequencing of tumors. - Lily Zheng; Noushin Niknafs; Laura D. Wood; Rachel Karchin; Robert B. Scharpf (Bioinform., 2022)

3D genomic mapping reveals multifocality of human pancreatic precancers. - Alicia M. Braxton; Ashley L. Kiemen; Mia P. Grahn; André Forjaz; Jeeun Parksong; Jaanvi Mahesh Babu; Jiaying Lai; Lily Zheng; Noushin Niknafs; Liping Jiang; Haixia Cheng; Qianqian Song; et al. (Nat., 2024)