BlastAlign: a program that uses blast to align problematic nucleotide sequences. - Robert Belshaw; Aris Katzourakis (Bioinform., 2005)

The RNA Virus Database. - Robert Belshaw; Tulio de Oliveira; Sidney Markowitz; Andrew Rambaut (Nucleic Acids Res., 2009)

Integrating Phylodynamics and Epidemiology to Estimate Transmission Diversity in Viral Epidemics. - Gkikas Magiorkinis; Vana Sypsa; Emmanouil Magiorkinis; Dimitrios Paraskevis; Antigoni Katsoulidou; Robert Belshaw; Christophe Fraser; Oliver George Pybus; Angelos Hatzakis (PLoS Comput. Biol., 2013)

BreakAlign: a Perl program to align chimaeric (split) genomic NGS reads and allow visual confirmation of novel retroviral integrations. - Emanuele Marchi; Mathew Jones; Paul Klenerman; John Frater; Gkikas Magiorkinis; Robert Belshaw (BMC Bioinform., 2022)