The Breakpoint Graph in Ciliates. - Robert Brijder; Hendrik Jan Hoogeboom; Grzegorz Rozenberg (CompLife, 2005)

Applicability of Loop Recombination in Ciliates Using the Breakpoint Graph. - Robert Brijder; Hendrik Jan Hoogeboom; Michael Muskulus (CompLife, 2006)

Membrane Systems with External Control. - Robert Brijder; Matteo Cavaliere; Agustin Riscos-Núñez; Grzegorz Rozenberg; Dragos Sburlan (Workshop on Membrane Computing, 2006)

Membrane Systems with Marked Membranes. - Robert Brijder; Matteo Cavaliere; Agustin Riscos-Núñez; Grzegorz Rozenberg; Dragos Sburlan (MeCBIC@ICALP, 2006)

Complexity of bio-computation: symbolic dynamics in membrane systems. - Michael Muskulus; Robert Brijder (Int. J. Found. Comput. Sci., 2006)

Communication Membrane Systems with Active Symports. - Robert Brijder; Matteo Cavaliere; Agustin Riscos-Núñez; Grzegorz Rozenberg; Dragos Sburlan (J. Autom. Lang. Comb., 2006)

Reducibility of gene patterns in ciliates using the breakpoint graph. - Robert Brijder; Hendrik Jan Hoogeboom; Grzegorz Rozenberg (Theor. Comput. Sci., 2006)

Characterizing Reduction Graphs for Gene Assembly in Ciliates. - Robert Brijder; Hendrik Jan Hoogeboom (Developments in Language Theory, 2007)

From Micro to Macro: How the Overlap Graph Determines the Reduction Graph in Ciliates. - Robert Brijder; Hendrik Jan Hoogeboom; Grzegorz Rozenberg (FCT, 2007)

A String-Based Model for Simple Gene Assembly. - Robert Brijder; Miika Langille; Ion Petre (FCT, 2007)

How Overlap Determines the Macronuclear Genes in Ciliates - Robert Brijder; Hendrik Jan Hoogeboom; Grzegorz Rozenberg (CoRR, 2007)

Multiset-Based Self-Assembly of Graphs. - Francesco Bernardini; Robert Brijder; Grzegorz Rozenberg; Claudio Zandron (Fundam. Informaticae, 2007)

Cycles and communicating classes in membrane systems and molecular dynamics. - Michael Muskulus; Daniela Besozzi; Robert Brijder; Paolo Cazzaniga; Sanne Houweling; Dario Pescini; Grzegorz Rozenberg (Theor. Comput. Sci., 2007)

Extending the Overlap Graph for Gene Assembly in Ciliates. - Robert Brijder; Hendrik Jan Hoogeboom (LATA, 2008)

The fibers and range of reduction graphs in ciliates. - Robert Brijder; Hendrik Jan Hoogeboom (Acta Informatica, 2008)

Strategies of loop recombination in ciliates. - Robert Brijder; Hendrik Jan Hoogeboom; Michael Muskulus (Discret. Appl. Math., 2008)

Membrane systems with proteins embedded in membranes. - Robert Brijder; Matteo Cavaliere; Agustin Riscos-Núñez; Grzegorz Rozenberg; Dragos Sburlan (Theor. Comput. Sci., 2008)

Reality-and-Desire in Ciliates. - Robert Brijder; Hendrik Jan Hoogeboom (Algorithmic Bioprocesses, 2009)

Non-Confluent NLC Graph Grammar Inference by Compressing Disjoint Subgraphs. - Hendrik Blockeel; Robert Brijder (CoRR, 2009)

Nullity Invariance for Pivot and the Interlace Polynomial - Robert Brijder; Hendrik Jan Hoogeboom (CoRR, 2009)

Reduction Graphs from Overlap Graphs for Gene Assembly in Ciliates. - Robert Brijder; Hendrik Jan Hoogeboom; Grzegorz Rozenberg (Int. J. Found. Comput. Sci., 2009)

Perfectly quilted rectangular snake tilings. - Robert Brijder; Hendrik Jan Hoogeboom (Theor. Comput. Sci., 2009)

Pivot and Loop Complementation on Graphs and Set Systems. - Robert Brijder; Hendrik Jan Hoogeboom (TAMC, 2010)

Maximal pivots on graphs with an application to gene assembly. - Robert Brijder; Hendrik Jan Hoogeboom (Discret. Appl. Math., 2010)

A Note on Causalities in Reaction Systems. - Robert Brijder; Andrzej Ehrenfeucht; Grzegorz Rozenberg (Electron. Commun. Eur. Assoc. Softw. Sci. Technol., 2010)

Combining overlap and containment for gene assembly in ciliates. - Robert Brijder; Hendrik Jan Hoogeboom (Theor. Comput. Sci., 2010)

Extended strings and graphs for simple gene assembly. - Robert Brijder; Miika Langille; Ion Petre (Theor. Comput. Sci., 2010)

Reaction Systems with Duration. - Robert Brijder; Andrzej Ehrenfeucht; Grzegorz Rozenberg (Computation, Cooperation, and Life, 2011)

Characterizing Compressibility of Disjoint Subgraphs with NLC Grammars. - Robert Brijder; Hendrik Blockeel (LATA, 2011)

The group structure of pivot and loop complementation on graphs and set systems. - Robert Brijder; Hendrik Jan Hoogeboom (Eur. J. Comb., 2011)

A Tour of reaction Systems. - Robert Brijder; Andrzej Ehrenfeucht; Michael G. Main; Grzegorz Rozenberg (Int. J. Found. Comput. Sci., 2011)

On aggregation in multiset-based self-assembly of graphs. - Francesco Bernardini; Robert Brijder; Matteo Cavaliere; Giuditta Franco; Hendrik Jan Hoogeboom; Grzegorz Rozenberg (Nat. Comput., 2011)

Representing Reaction Systems by Trees. - Robert Brijder; Andrzej Ehrenfeucht; Grzegorz Rozenberg (Computation, Physics and Beyond, 2012)

A Type System for DNAQL. - Robert Brijder; Joris J. M. Gillis; Jan Van den Bussche (DNA, 2012)

Binary Symmetric Matrix Inversion Through Local Complementation. - Robert Brijder; Hendrik Jan Hoogeboom (Fundam. Informaticae, 2012)

A comparison of graph-theoretic DNA hybridization models. - Robert Brijder; Joris J. M. Gillis; Jan Van den Bussche (Theor. Comput. Sci., 2012)

Pivots, determinants, and perfect matchings of graphs. - Robert Brijder; Tero Harju; Hendrik Jan Hoogeboom (Theor. Comput. Sci., 2012)

Computational Nature of Gene Assembly in Ciliates. - Robert Brijder; Mark Daley; Tero Harju; Natasa Jonoska; Ion Petre; Grzegorz Rozenberg (Handbook of Natural Computing, 2012)

The DNA query language DNAQL. - Robert Brijder; Joris J. M. Gillis; Jan Van den Bussche (ICDT, 2013)

The Adjacency Matroid of a Graph. - Lorenzo Traldi; Robert Brijder; Hendrik Jan Hoogeboom (Electron. J. Comb., 2013)

On the inference of non-confluent NLC graph grammars. - Robert Brijder; Hendrik Blockeel (J. Log. Comput., 2013)

Graph-theoretic formalization of hybridization in DNA sticker complexes. - Robert Brijder; Joris J. M. Gillis; Jan Van den Bussche (Nat. Comput., 2013)

Nullity and Loop Complementation for Delta-Matroids. - Robert Brijder; Hendrik Jan Hoogeboom (SIAM J. Discret. Math., 2013)

Graph Polynomials Motivated by Gene Rearrangements in Ciliates. - Robert Brijder; Hendrik Jan Hoogeboom (CiE, 2014)

Output Stability and Semilinear Sets in Chemical Reaction Networks and Deciders. - Robert Brijder (DNA, 2014)

Interlace polynomials for multimatroids and delta-matroids. - Robert Brijder; Hendrik Jan Hoogeboom (Eur. J. Comb., 2014)

The Algebra of Gene Assembly in Ciliates. - Robert Brijder; Hendrik Jan Hoogeboom (Discrete and Topological Models in Molecular Biology, 2014)

Dominance and T-Invariants for Petri Nets and Chemical Reaction Networks. - Robert Brijder (DNA, 2015)

Recombination faults in gene assembly in ciliates modeled using multimatroids. - Robert Brijder (Theor. Comput. Sci., 2015)

Robustness of Expressivity in Chemical Reaction Networks. - Robert Brijder; David Doty; David Soloveichik (DNA, 2016)

Isotropic Matroids I: Multimatroids and Neighborhoods. - Robert Brijder; Lorenzo Traldi (Electron. J. Comb., 2016)

Isotropic Matroids II: Circle Graphs. - Robert Brijder; Lorenzo Traldi (Electron. J. Comb., 2016)

Minimal output unstable configurations in chemical reaction networks and deciders. - Robert Brijder (Nat. Comput., 2016)

Isotropic Matroids III: Connectivity. - Robert Brijder; Lorenzo Traldi (Electron. J. Comb., 2017)

Dominance and deficiency for Petri nets and chemical reaction networks. - Robert Brijder (Nat. Comput., 2017)

Sorting by reversals and the theory of 4-regular graphs. - Robert Brijder (Theor. Comput. Sci., 2017)

Orienting transversals and transition polynomials of multimatroids. - Robert Brijder (Adv. Appl. Math., 2018)

Democratic, existential, and consensus-based output conventions in stable computation by chemical reaction networks. - Robert Brijder; David Doty; David Soloveichik (Nat. Comput., 2018)

Preface. - Robert Brijder; Lulu Qian (Nat. Comput., 2018)

Computing with chemical reaction networks: a tutorial. - Robert Brijder (Nat. Comput., 2019)

MATLANG: Matrix operations and their expressive power. - Robert Brijder; Floris Geerts; Jan Van den Bussche; Timmy Weerwag (SIGMOD Rec., 2019)

On the Expressive Power of Query Languages for Matrices. - Robert Brijder; Floris Geerts; Jan Van den Bussche; Timmy Weerwag (ACM Trans. Database Syst., 2019)

A Characterization of Circle Graphs in Terms of Multimatroid Representations. - Robert Brijder; Lorenzo Traldi (Electron. J. Comb., 2020)

Counterexamples to a conjecture of Las Vergnas. - Robert Brijder; Hendrik Jan Hoogeboom (Eur. J. Comb., 2020)

DNAQL: a query language for DNA sticker complexes. - Robert Brijder; Joris J. M. Gillis; Jan Van den Bussche (Nat. Comput., 2021)

On matrices and K-relations. - Robert Brijder; Marc Gyssens; Jan Van den Bussche (Ann. Math. Artif. Intell., 2022)

A characterization of circle graphs in terms of total unimodularity. - Robert Brijder; Lorenzo Traldi (Eur. J. Comb., 2022)