Simultaneous Sequence Alignment and Tree Construction Using Hidden Markov Models. - Robert C. Edgar; Kimmen Sjölander (Pacific Symposium on Biocomputing, 2003)

SATCHMO: Sequence Alignment and Tree Construction Using Hidden Markov Models. - Robert C. Edgar; Kimmen Sjölander (Bioinform., 2003)

MUSCLE: Multiple Sequence Alignment with Improved Accuracy and Speed. - Robert C. Edgar (CSB, 2004)

A comparison of scoring functions for protein sequence profile alignment. - Robert C. Edgar; Kimmen Sjölander (Bioinform., 2004)

COACH: profile-profile alignment of protein families using hidden Markov models. - Robert C. Edgar; Kimmen Sjölander (Bioinform., 2004)

MUSCLE: a multiple sequence alignment method with reduced time and space complexity. - Robert C. Edgar (BMC Bioinform., 2004)

PILER: identification and classification of genomic repeats. - Robert C. Edgar; Eugene W. Myers (ISMB (Supplement of Bioinformatics), 2005)

PILER-CR: Fast and accurate identification of CRISPR repeats. - Robert C. Edgar (BMC Bioinform., 2007)

Optimizing substitution matrix choice and gap parameters for sequence alignment. - Robert C. Edgar (BMC Bioinform., 2009)

Search and clustering orders of magnitude faster than BLAST. - Robert C. Edgar (Bioinform., 2010)

UCHIME improves sensitivity and speed of chimera detection. - Robert C. Edgar; Brian J. Haas; José Carlos Clemente; Christopher Quince; Rob Knight 001 (Bioinform., 2011)

Error filtering, pair assembly and error correction for next-generation sequencing reads. - Robert C. Edgar; Henrik Flyvbjerg (Bioinform., 2015)

Updating the 97% identity threshold for 16S ribosomal RNA OTUs. - Robert C. Edgar (Bioinform., 2018)